?`Hits-class` explains that as.table returns an object of class table, but it's an integer vector.
class(peaksToGenes) [1] "Hits" attr(,"package") [1] "IRanges" class(as.table(t(peaksToGenes))) [1] "integer" This is in IRanges_1.18.2 -------------------------------------- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel