Dear Nico, On 5 September 2013 20:39, Nicolas Delhomme <delho...@embl.de> wrote: > Hej Bioc! > > I'd like to update the data in that data package: > > https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/RnaSeqTutorial/ > > but as the data is not stored in SVN, I'm not sure how I'm supposed to do it.
The Experiment Data Packages section in http://master.bioconductor.org/developers/source-control/ describes how to obtain the package. Different parts of the package reside on different urls. For example, for my pRolocdata data package $ svn info Path: . Working Copy Root Path: /home/lgatto/dev/01_svn/datapkgs/pRolocdata URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRolocdata [...] $ svn info data Path: data Working Copy Root Path: /home/lgatto/dev/01_svn/datapkgs/pRolocdata/data URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/pRolocdata/data [...] $ svn info inst/extdata Path: inst/extdata Working Copy Root Path: /home/lgatto/dev/01_svn/datapkgs/pRolocdata/inst/extdata URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/pRolocdata/inst/extdata [...] In you case - https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRnaSeqTutorial - https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/data_store/pRnaSeqTutorial/data When you commit, make sure to commit form the respective directories; do not add data and inst/extdata to https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/pRnaSeqTutorial, as svn status could indicate: $svn status ? data ? inst/extdata Hope this helps. Laurent > Thanks, > > Nico > > --------------------------------------------------------------- > Nicolas Delhomme > > Genome Biology Computational Support > > European Molecular Biology Laboratory > > Tel: +49 6221 387 8310 > Email: nicolas.delho...@embl.de > Meyerhofstrasse 1 - Postfach 10.2209 > 69102 Heidelberg, Germany > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
