Everyone,
*biosvd* is a new package available in BioC 2.14 devel.
Interested in a global picture of the dynamics in your data set in terms of
patterns of similar regulation and function or similar cellular state and
biological phenotype? Regardless of the nature of your data set
(expression, proteomics, metabolomics, etc), the biosvd package allows for
high-throughput data processing, outlier detection, noise removal and
dynamic modeling, based on the framework of Singular Value Decomposition.
It provides the user with summary graphs and an interactive html report to
sort features according to their contribution to the detected patterns.
Please let me know of any issues you encounter when testing.
Best regards,
Anneleen Daemen
--
Anneleen Daemen, PhD
Computational Biologist
Bioinformatics & Computational Biology Department
Genentech, Inc.
1 DNA Way, MS 93
South San Francisco, CA 94080
Phone: 1-650-225-5689
Fax: 1-650-225-5389
Email: daem...@gene.com
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