Hej Dan! Thanks for the details and the super quick answer :-)
Nico --------------------------------------------------------------- Nicolas Delhomme The Street Lab Department of Plant Physiology Umeå Plant Science Center Tel: +46 90 786 7989 Email: nicolas.delho...@umu.se SLU - Umeå universitet Umeå S-901 87 Sweden --------------------------------------------------------------- On 15 Apr 2014, at 16:42, Dan Tenenbaum <dtene...@fhcrc.org> wrote: > Hi Nico, > > ----- Original Message ----- >> From: "Nicolas Delhomme" <nicolas.delho...@umu.se> >> To: "Dan Tenenbaum" <dtene...@fhcrc.org> >> Cc: "Ashley Ng" <a...@wehi.edu.au>, bioc-devel@r-project.org >> Sent: Tuesday, April 15, 2014 7:39:00 AM >> Subject: Re: [Bioc-devel] biocLite “no packages in repository” error >> >> Hej Dan! >> >> With regards to this, do you have any timeline - since you got >> Maverick machines now :-) - as to when Maverick will be supported? >> > > We have ordered the machines. I have just asked for an update on the order > status. As soon as the machines arrive, are configured, and start building, > we'll be able to support binary Mavericks packages. We'll make an > announcement on this list. > > Note that even CRAN's builds of Mavericks packages are not complete and this > may impact Bioconductor's builds, but we'll work with CRAN to resolve this. > >> As a feedback, compiling R and installing from source on Maverick has >> been fairly stable for me - just recently encountered a problem with >> compiling mzR but got a workaround from the package developers - and >> this since Maverick is out (October last year). >> > > Yes, it's mostly a (lack of) hardware problem, not a technical one. > > Dan > > >> Cheers, >> >> Nico >> >> --------------------------------------------------------------- >> Nicolas Delhomme >> >> The Street Lab >> Department of Plant Physiology >> Umeå Plant Science Center >> >> Tel: +46 90 786 7989 >> Email: nicolas.delho...@umu.se >> SLU - Umeå universitet >> Umeå S-901 87 Sweden >> --------------------------------------------------------------- >> >> On 15 Apr 2014, at 16:28, Dan Tenenbaum <dtene...@fhcrc.org> wrote: >> >>> Never mind, >>> >>> The problem is that you are using the Mavericks build which is not >>> yet supported. Please use the Snow Leopard build of R. >>> >>> See this link for more information: >>> >>> https://stat.ethz.ch/pipermail/bioc-devel/2014-April/005497.html >>> >>> Dan >>> >>> >>> ----- Original Message ----- >>>> From: "Dan Tenenbaum" <dtene...@fhcrc.org> >>>> To: "Ashley Ng" <a...@wehi.edu.au> >>>> Cc: bioc-devel@r-project.org >>>> Sent: Tuesday, April 15, 2014 7:26:11 AM >>>> Subject: Re: biocLite “no packages in repository” error >>>> >>>> Hi Ashley, >>>> >>>> ----- Original Message ----- >>>>> From: "Ashley Ng" <a...@wehi.edu.au> >>>>> To: dtene...@fhcrc.org >>>>> Cc: bioc-devel@r-project.org >>>>> Sent: Tuesday, April 15, 2014 3:04:23 AM >>>>> Subject: biocLite “no packages in repository” error >>>>> >>>>> Hi Dan >>>>> >>>>> I seem to getting a “no packages in repository” biocLite error >>>>> after >>>>> installing R 3.10 and trying to upgrade packages: >>>>> >>>>>> source("http://bioconductor.org/biocLite.R";) >>>>> Bioconductor version 2.14 (BiocInstaller 1.13.3), ?biocLite for >>>>> help >>>>>> biocLite() >>>>> Error: 'no packages in repository (no internet connection?)' >>>>> while >>>>> trying >>>>> http://bioconductor.org/packages/2.14/bioc >>>>> >>>>>> sessionInfo() >>>>> R version 3.1.0 (2014-04-10) >>>>> Platform: x86_64-apple-darwin13.1.0 (64-bit) >>>>> >>>>> locale: >>>>> [1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8 >>>>> >>>>> attached base packages: >>>>> [1] stats graphics grDevices utils datasets methods >>>>> base >>>>> >>>>> other attached packages: >>>>> [1] BiocInstaller_1.13.3 >>>>> >>>>> loaded via a namespace (and not attached): >>>>> [1] tools_3.1.0 >>>>>> >>>>> >>>> >>>> What is the result of the following command: >>>> >>>> library(BiocInstaller) >>>> biocinstallRepos() >>>> >>>> >>>> ? >>>> >>>> Dan >>>> >>>> >>>> >>>>> Cheers >>>>> >>>>> Ashley Ng >>>>> >>>>> Clinical Haematologist and Post Doctoral Fellow >>>>> The Royal Melbourne Hospital >>>>> The Walter and Eliza Hall Institute of Medical Research, Cancer >>>>> and >>>>> Haematology Division >>>>> 1G Royal Parade >>>>> Parkville, 3050 >>>>> Melbourne, Australia >>>>> >>>>> >>>>> >>>>> ______________________________________________________________________ >>>>> The information in this email is confidential and intended solely >>>>> for >>>>> the addressee. >>>>> You must not disclose, forward, print or use it without the >>>>> permission of the sender. >>>>> ______________________________________________________________________ >>>>> >>>> >>> >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
