Thank you Dan. I should have looked at the time of my commit.
Best, davide On Tue, Apr 22, 2014 at 12:15 PM, Dan Tenenbaum <dtene...@fhcrc.org> wrote: > Hi Davide, > > ----- Original Message ----- >> From: "davide risso" <risso.dav...@gmail.com> >> To: bioc-devel@r-project.org >> Sent: Tuesday, April 22, 2014 12:06:09 PM >> Subject: [Bioc-devel] Package vignette and knitr >> >> Dear list, >> >> I've modified the vignette of my EDASeq package to work with knitr. >> >> Following the guidelines in the BiocStyle vignette, I've added >> >> Suggests: BiocStyle, knitr >> VignetteBuilder: knitr >> >> to the DESCRIPTION file and >> >> %\VignetteEngine{knitr::knitr} >> >> to the top of the .Rnw file. >> >> The package builds fine on my machine, but does not build in any of >> the Bioconductor machines: >> http://master.bioconductor.org/checkResults/devel/bioc-LATEST/EDASeq/zin1-buildsrc.html >> >> Command output >> * checking for file ‘EDASeq/DESCRIPTION’ ... OK >> * preparing ‘EDASeq’: >> * checking DESCRIPTION meta-information ... OK >> * installing the package to build vignettes >> * creating vignettes ... ERROR >> Quitting from lines 67-69 (EDASeq.Rnw) >> Error: processing vignette 'EDASeq.Rnw' failed with diagnostics: >> object 'opts_chunk' not found >> Execution halted >> >> Lines 67-69 are: >> >> <<setup, echo=FALSE>>= >> library(knitr) >> opts_chunk$set(dev="pdf", fig.align="center", cache=FALSE, >> message=FALSE, out.width=".55\\textwidth", echo=TRUE, >> results="markup", fig.show="hold") >> options(width=60) >> @ >> >> Am I missing something? >> > > You added the line > library(knitr) > > after 5PM yesterday (Seattle time) too late to make it into today's build > report. It should be OK tomorrow. > > Dan > > > >> Best, >> davide >> >> -- >> Davide Risso, PhD >> Post Doctoral Scholar >> Department of Statistics >> University of California, Berkeley >> 344 Li Ka Shing Center, #3370 >> Berkeley, CA 94720-3370 >> E-mail: davide.ri...@berkeley.edu >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> -- Davide Risso, PhD Post Doctoral Scholar Department of Statistics University of California, Berkeley 344 Li Ka Shing Center, #3370 Berkeley, CA 94720-3370 E-mail: davide.ri...@berkeley.edu _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel