Hi Michael,
I found the following bug when coercing a list to a SimpleList
with IRanges devel (not with IRanges release):
library(IRanges)
x <- list(a=matrix(rep("a", 6), nrow=3),
b=array(rep("b", 24), dim=c(3,4,2)))
Then:
> sapply(as(x, "SimpleList"), class)
a b
"matrix" "matrix"
> lapply(as(x, "SimpleList"), dim)
$a
[1] 3 2
$b
[1] 24 1
The array was turned into a matrix!
Note that the SimpleList() constructor behaves as expected:
> sapply(SimpleList(x), class)
a b
"matrix" "array"
> lapply(SimpleList(x), dim)
$a
[1] 3 2
$b
[1] 3 4 2
Do you think you can have a look?
Thanks,
H.
> sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] IRanges_1.99.25 S4Vectors_0.1.5 BiocGenerics_0.11.4
loaded via a namespace (and not attached):
[1] stats4_3.1.0
--
Hervé Pagès
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024
E-mail: hpa...@fhcrc.org
Phone: (206) 667-5791
Fax: (206) 667-1319
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