On Mon, Sep 22, 2014 at 10:17 AM, Cook, Malcolm <m...@stowers.org> wrote:
> Hi, > > > > https://github.com/vjcitn/biocMultiAssay/blob/master/vignettes/SEresolver.Rnw > > > >shows some modifications to [ that allow subsetting of SE by > >gene or pathway name > > Without reading the code, do you intend that SE[i,j] will , if i is > provided as vector of string, will subset those rows where the name of the > GRanges == i? > > By 'the GRanges' do you mean rowData(SE)? My code breaks that capability -- e.g., ALLse["982_at",] now fails. But I think that could be handled if desired. > >it may be premature to work at the [ level. Kasper suggested defining > >a suite of subsetBy operations that would accomplish this > > Reminder of a little background to where we are now, with warnings of > lurking dragons: > > Thanks for the reminder. I understand that training dragons can cause tears to be shed. > http://thread.gmane.org/gmane.science.biology.informatics.conductor/52971/focus=52993 > > > > >i think we could get something along these lines into the release without > >too much more work. votes? > > > Abstaining for now. > > Thanks - the topic is dear to me too. > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
