Hi Michel,
In BiocParallel 0.99.24 .convertToSimpleError() now checks for NULL and
converts to NA_character_.
I'm testing with BatchJobs 1.4, BiocParallel 0.99.24 and SLURM. I'm
still not getting an informative error message:
xx <- bplapply(1:2, FUN)
SubmitJobs |+++++++++++++++++++++++++++++++++++++++++++++++++| 100% (00:00:00)
Waiting [S:2 D:0 E:0 R:0] |+ | 0% (00:00:00)
Error: 2 errors; first error:
NA
For more information, use bplasterror(). To resume calculation, re-call
the function and set the argument 'BPRESUME' to TRUE or wrap the
previous call in bpresume().
Last error:
bplasterror()
0 / 2 partial results stored. First 2 error messages:
[1]: NA
[2]: NA
Valerie
On 09/26/2014 01:44 AM, Michel Lang wrote:
This was a bug in BatchJobs::waitForJobs(). We now throw an error if
jobs "disappear" due to a faulty template file. I'd appreciate if you
could confirm that this is now correctly catched and handled on your
system. I furthermore suggest to replace NULL with NA_character_ in
.convertToSimpleError().
I will upload a fixed BatchJobs to CRAN ASAP (but last upload was the
day before yesterday, thus we have to wait a few days).
Best,
Michel
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
