I'm getting a vignette error from the BioC build servers that I can't reproduce locally:
* creating vignettes ... ERROR Quitting from lines 116-119 (saps.Rmd) Error: processing vignette 'saps.Rmd' failed with diagnostics: could not find function "survfit" The offending lines in saps.Rmd call a function in my package, plotKM(), which in turn calls makes the following call: survcomp::km.coxph.plot( formula.s = survival::Surv(survivalTimes, followup) ~ cluster, data.s = dd, main.title=title, y.label=y.label, x.label=x.label, o.text=text, ...) survfit() is part of the "survival" package, and nowhere is it explicitly called, but I suppose it's being called from within km.coxph.plot()? My package imports both the "survival" and "survcomp" packages in the DESCRIPTION file. R CMD check, R CMD check --as-cran, and R CMD BiocCheck all work fine on several different computers for me. Any ideas? _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel