Hi,
I need to create dataset BiomartGeneRegionTrack via Gviz package to run
examples in my packages. But when I run
"R CMD check coMET", i have warning message for the checking :
checking data for non-ASCII characters ... WARNING
Warning: found non-ASCII strings
'[alpha cell,acidophil cell,acinar cell,adipoblast,adipocyte,amacrine
cell,beta cell,capsular cell,cementocyte,chief
cell,chondroblast,chondrocyte,chromaffin cell,chromophobic
cell,corticotroph,delta cell,dendritic cell,enterochromaffin
cell,ependymocyte,epithelium,erythroblast,erythrocyte,fibroblast,fibrocyte,follicular
cell,germ cell,germinal epithelium,giant cell,glial cell,glioblast,goblet
cell,gonadotroph,granulosa cell,haemocytoblast,hair
cell,hepatoblast,hepatocyte,hyalocyte,interstitial cell,juxtaglomerular
cell,keratinocyte,keratocyte,lemmal cell,leukocyte,luteal cell,lymphocytic stem
cell,lymphoid cell,lymphoid stem cell,macroglial cell,mammotroph,mast
cell,medulloblast,megakaryoblast,megakaryocyte,melanoblast,melanocyte,mesangial
cell,mesothelium,metamyelocyte,monoblast,monocyte,mucous neck cell,muscle
cell,myelocyte,myeloid cell,myeloid stem cell,myoblast,myoepithelial
cell,myofibrobast,neuroblast,neuroepithelium,neuron,odontoblast,osteoblast,osteoclast,osteocy!
te,oxyntic cell,parafollicular cell,paraluteal cell,peptic
cell,pericyte,phaeochromocyte,phalangeal cell,pinealocyte,pituicyte,plasma
cell,platelet,podocyte,proerythroblast,promonocyte,promyeloblast,promyelocyte,pronormoblast,reticulocyte,retinal
pigment epithelium,retinoblast,somatotroph,stem cell,sustentacular
cell,teloglial cell,zymogenic cell,small cell,Th1,Cell Type,M<c3><bc>ller
cell,primary oocyte,Claudius' cell,Th2,follicular dendritic
cell,astrocyte,white,T-lymphoblast,basal cell,T-lymphocyte,helper induced
T-lymphocyte:Th2,B-lymphocyte,neutrophil,oocyte,unclassifiable (Cell
Type),natural killer cell,helper induced T-lymphocyte,brown,CD4+,Hensen
cell,lymphocyte,cardiac muscle cell,lymphoblast,Paneth cell,alveolar
macrophage,macrophage,squamous cell,oligodendrocyte,smooth muscle
cell,gamete,spermatid,Schwann cell,CD34+,spermatocyte,helper induced
T-lymphocyte:Th1,astroblast,eosinophil,oligodendroblast,basophil,peripheral
blood mononuclear cell,histiocyte,Sertoli cel!
l,endothelium,granulocyte,spermatozoon,Merkel cell,skeletal muscle cel
l,thymocyte,foam cell,ovum,secondary spermatocyte,Langerhans cell,primary
spermatocyte,transitional,Purkinje cell,Kupffer cell,secondary
oocyte,B-lymphoblast]' in object 'biomTrack'
chrom <- "chr2"
start <- 38290160
end <- 38303219
gen <- "hg19"
biomTrack <- BiomartGeneRegionTrack(genome = gen,
chromosome = chr, start = start,
end = end, name = "ENSEMBL",
fontcolor="black", groupAnnotation =
"group",
just.group = "above",showId=showId )
Do you have an idea to correct this error? I think that we need to discuss with
EMBL to correct that, do we ?
Tiphaine
----------------------------
Tiphaine Martin
PhD Research Student | King's College
The Department of Twin Research & Genetic Epidemiology | Genetics & Molecular
Medicine Division
St Thomas' Hospital
4th Floor, Block D, South Wing
SE1 7EH, London
United Kingdom
email : tiphaine.mar...@kcl.ac.uk
Fax: +44 (0) 207 188 6761
[[alternative HTML version deleted]]
_______________________________________________
Bioc-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/bioc-devel
