hi Kevin,
if you're talking about the devel version of BiocInstaller, the SVN logs
show a commit yesterday with some correction on the BiocInstaller
package, just svn the last version if you don't want to wait until the
newer version gets built:
vn export --username readonly --password readonly
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocInstaller BiocInstaller
and R CMD build and INSTALL this newer version (1.17.1).
cheers,
robert.
On 10/16/2014 11:45 AM, Kevin Rue-Albrecht wrote:
Hi Bioconductors,
I got the *BUILD* ERROR report below on all platforms last night.
Given the fact that I didn't update my package since the last (successful)
build, and the error ''BiocInstaller' package not in repository'', I have
a feeling this is due to a problem on the build platforms ?
In which case, I wonder how many other packages may be affected the same
way. Most of the packages seem fine though.
I can see that the BiocInstaller package got *CHECK* ERROR on all platforms
in the most recent report. Could that be the origin of the problem?
In my vignette, I give the typical installation code "biocLite(GOexpress)"
which likely caused the build error when trying to load the BiocInstaller
library.
Thanks in advance for advising me
Kind regards,
Kevin
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.1-bioc/R/bin/R CMD build --keep-empty-dirs
--no-resave-data GOexpress
###
##############################################################################
##############################################################################
* checking for file ‘GOexpress/DESCRIPTION’ ... OK
* preparing ‘GOexpress’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Bioconductor version 3.1 (BiocInstaller 1.17.0), ?biocLite for help
Error: processing vignette 'GOexpress-UsersGuide.Rnw' failed with diagnostics:
chunk 2
Error : ''BiocInstaller' package not in repository' while trying
http://bioconductor.org/packages/3.1/bioc
Execution halted
--
Robert Castelo, PhD
Associate Professor
Dept. of Experimental and Health Sciences
Universitat Pompeu Fabra (UPF)
Barcelona Biomedical Research Park (PRBB)
Dr Aiguader 88
E-08003 Barcelona, Spain
telf: +34.933.160.514
fax: +34.933.160.550
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