Dear all, I have these comments and did not found solution for silencing them.
1 - What about Vignette? 2 - The version is "package.0.99.0.tar.gz" 3 - In wich file can I clarify permanent objects. To avoid <<- I create new Environment with myGlobalEnv <- new.env(parent = emptyenv()) I have many permanent objects because my package is a GUI. All these objects are useful for different functions and reduce the computing time and the multiple running of the same function. 4- Indenting, Tabs and long lines were not found. Can I submit with theses comments? Thanks Karim $requirements character(0) $recommendations [1] "Evaluate more vignette chunks." "y of x.y.z version should be even in release" $considerations [1] "Clarifying how objects Li, A, ttCasesGenProfs, EventTime, Category, Continu, Category, ttMain, CasesStudies, curselectCases, fname.GCT, fname.CLS, ttMain, GenesDetails, CaseChoice, mSigDB_SubName, GenesDetails, lenght, ttCasesGenProfs, myGlobalEnv (used in canceR , dialogMut , dialogOptionPhenoTest, dialogOptionPhenoTest , getClinicalDataMatrix, geteSet, getGCTCLSExample, getGeneExpMatrix, getGenesClassifier, getGenesTree_MultipleCases, getGSEAlm_Diseases, getGSEAlm_Variables, getMegaProfData, getMetDataMultipleGenes, getMSigDBExample , getMSigDBExample, GSEA, GSEA.Analyze.Sets, plot_1Gene_2GenProfs, testCheckedCaseGenProf) were initialized. Maybe they are part of a data set loaded with data(), or perhaps part of an object referenced in with() or within()." [2] "Shortening lines; 1227 lines (11%) are > 80 characters long." [3] "Replacing tabs with 4 spaces; 6 lines (0%) contain tabs." [4] "Indenting lines with a multiple of 4 spaces; 1752 lines (15%) are not." [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel