Hi all, can anyone please explain or point me to an explanation of how to replace org.Hs.egCHR and friends that appear to be deprecated in the devel version? The deprecation message isn't very helpful. Thanks!
x = org.Hs.egCHR Warning message: In (function () : org.Hs.egCHR is deprecated. Please use an appropriate TxDb object or package for this kind of data. sessionInfo() R Under development (unstable) (2014-11-24 r67057) Platform: x86_64-unknown-linux-gnu (64-bit) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] parallel stats4 stats graphics grDevices utils datasets [8] methods base other attached packages: [1] org.Hs.eg.db_3.0.0 RSQLite_1.0.0 DBI_0.3.1 [4] AnnotationDbi_1.29.12 GenomeInfoDb_1.3.12 IRanges_2.1.35 [7] S4Vectors_0.5.16 Biobase_2.27.1 BiocGenerics_0.13.4 [10] BiocInstaller_1.17.3 loaded via a namespace (and not attached): [1] tools_3.2.0 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
