---------- Forwarded message ---------- From: "Karolis Uziela" <karolis.uzi...@scilifelab.se> Date: Feb 19, 2015 9:22 AM Subject: readGAlignmentsFromBam function To: "Michael Lawrence" <lawrence.mich...@gene.com> Cc: "bioconduc...@r-project.org" <bioconduc...@r-project.org>
Hi, I have looked at R check results for the devel version of Bioconductor and I noticed that the package I developed ("prebs") gives this warning: Warning: 'readGAlignmentsFromBam' is deprecated. What is the new function that should be used instead of readGAlignmentsFromBam (GenomicAlignments package)? Do the changes affect readGAlignmentPairs function, too? Regards, Karolis -- Karolis Uziela PhD student Science for Life Laboratory Box 1031 17121 Solna, Sweden Mob. +46 729 120 395 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel