---------- Forwarded message ----------
From: "Karolis Uziela" <karolis.uzi...@scilifelab.se>
Date: Feb 19, 2015 9:22 AM
Subject: readGAlignmentsFromBam function
To: "Michael Lawrence" <lawrence.mich...@gene.com>
Cc: "bioconduc...@r-project.org" <bioconduc...@r-project.org>
Hi,
I have looked at R check results for the devel version of Bioconductor and
I noticed that the package I developed ("prebs") gives this warning:
Warning: 'readGAlignmentsFromBam' is deprecated.
What is the new function that should be used instead of
readGAlignmentsFromBam (GenomicAlignments package)? Do the changes
affect readGAlignmentPairs function, too?
Regards,
Karolis
--
Karolis Uziela
PhD student
Science for Life Laboratory
Box 1031
17121 Solna, Sweden
Mob. +46 729 120 395
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