Hi jo, getChromInfoFromBiomart() is a higher level function that is exported, documented, and intended to be used by the user for that, rather than internal helpers fetchChromLengthsFromEnsembl() and fetchChromLengthsFromEnsemblPlants().
However, after some discussions here with Marc and Sonali, my understanding is that the GRanges objects made from the Ensembl GTF files are going to have their seqinfo updated soon so you won't need that. H. On 04/11/2015 12:37 PM, Rainer Johannes wrote:
I wanted to ask whether it would be possible to export the functions "fetchChromLengthsFromEnsembl" and "fetchChromLengthsFromEnsemblPlants" in GenomicFeatures, as I find these methods quite useful to retrieve chromosome lengths. best, jo _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
-- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel