Just added the full output to the README.md file https://github.com/vladpetyuk/toypack/blob/master/README.md
On Thu, Jun 25, 2015 at 12:28 PM, Dan Tenenbaum <dtene...@fredhutch.org> wrote: > > > ----- Original Message ----- > > From: "Vladislav Petyuk" <pet...@gmail.com> > > To: Bioc-devel@r-project.org > > Sent: Thursday, June 25, 2015 12:16:50 PM > > Subject: [Bioc-devel] Challenges with package installation on fresh R > > > > Hi all, > > I ran into a problem with dependencies during package installation. > > Here is an example that intends to reproduce the problem > > > > https://github.com/vladpetyuk/toypack > > > > Majority of the packages (in Imports/Depends/Suggests and their > > Imports/Depends/Suggests) install just fine. > > However there is a handful of packages ("DO.db", "GO.db", > > "org.Ce.eg.db", > > "org.Hs.eg.db" and "reactome.db") that are being skipped for not an > > obvious > > to me reason. > > In this toy example there is no use of those skipped packages. So it > > won't > > results in any kind of error. But in the real package their lack > > results > > in errors. > > > > You need to provide the complete output of R when you try and install the > package. > The error is in that output somewhere. > > Dan > > > > Thank you, > > Vlad > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel