Hi All Is it acceptable to specify a particular version of igraph for our package to use, even as a temporary fix?
Failing that, does anyone know of any way I can get R to tell me which functions in our package (CausalR) call which igraph functions? Thanks Glyn -----Original Message----- From: Bioc-devel [mailto:bioc-devel-boun...@r-project.org] On Behalf Of bioc-devel-requ...@r-project.org Sent: 20 July 2015 11:00 To: bioc-devel@r-project.org Subject: Bioc-devel Digest, Vol 136, Issue 20 Send Bioc-devel mailing list submissions to bioc-devel@r-project.org To subscribe or unsubscribe via the World Wide Web, visit https://stat.ethz.ch/mailman/listinfo/bioc-devel or, via email, send a message with subject or body 'help' to bioc-devel-requ...@r-project.org You can reach the person managing the list at bioc-devel-ow...@r-project.org When replying, please edit your Subject line so it is more specific than "Re: Contents of Bioc-devel digest..." Today's Topics: 1. changes to igraph break many Bioconductor packages (in release and devel) (Dan Tenenbaum) ---------------------------------------------------------------------- Message: 1 Date: Sun, 19 Jul 2015 14:38:39 -0700 (PDT) From: Dan Tenenbaum <dtene...@fredhutch.org> To: bioc-devel <bioc-devel@r-project.org> Subject: [Bioc-devel] changes to igraph break many Bioconductor packages (in release and devel) Message-ID: <622339655.4339608.1437341919035.javamail.r...@fredhutch.org> Content-Type: text/plain; charset=utf-8 Hello, The igraph package (in CRAN) recently had a major API change. The changes are detailed in its NEWS file: https://cran.r-project.org/web/packages/igraph/news.html The changes cause many Bioconductor packages to break in both release and devel. If you are the maintainer of one of the following packages, please see our build report (release: http://bioconductor.org/checkResults/release/bioc-LATEST/ ; devel: http://bioconductor.org/checkResults/devel/bioc-LATEST/ ) for a report of the error and fix it right away in release (if your package is in release) and devel. You should increment the package version number as well in order to cause your changes to propagate. BioNet CausalR facopy FEM * FGNet * geNetClassifier GenomicInteractions GenoView HTSanalyzeR netbiov * - these packages also need to be sure to import (in DESCRIPTION and NAMESPACE) the graph package. If you have any questions, please send them to the bioc-devel mailing list. Thanks, Dan ------------------------------ Subject: Digest Footer _______________________________________________ Bioc-devel mailing list Bioc-devel@r-project.org https://stat.ethz.ch/mailman/listinfo/bioc-devel ------------------------------ End of Bioc-devel Digest, Vol 136, Issue 20 ******************************************* ________________________________ This e-mail was sent by GlaxoSmithKline Services Unlimited (registered in England and Wales No. 1047315), which is a member of the GlaxoSmithKline group of companies. The registered address of GlaxoSmithKline Services Unlimited is 980 Great West Road, Brentford, Middlesex TW8 9GS. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
