Hi,
I am trying to get right my new package
(http://github.com/lpantano/isomiRs). But I am having some problems with
the packages I import.
The main problem is that I get warnings while loading my packages
because some dplyr replaces functions in others packages like S4Vectors
and others.
This is my NAMESPACE
import(BiocGenerics)
import(S4Vectors)
import(IRanges)
import(GenomicRanges)
import(SummarizedExperiment)
import(dplyr)
importFrom(plyr, join_all)
import(DESeq2)
import(methods)
import(RColorBrewer)
import(gplots)
import(ggplot2)
import(GGally)
import(DiscriMiner)
and these are the warnings:
** preparing package for lazy loading
Warning: replacing previous import by ‘dplyr::slice’ when loading ‘isomiRs’
Warning: replacing previous import by ‘dplyr::collapse’ when loading
‘isomiRs’
Warning: replacing previous import by ‘dplyr::intersect’ when loading
‘isomiRs’
Warning: replacing previous import by ‘dplyr::setdiff’ when loading
‘isomiRs’
Warning: replacing previous import by ‘dplyr::union’ when loading ‘isomiRs’
Warning: replacing previous import by ‘dplyr::rename’ when loading ‘isomiRs’
Warning: replacing previous import by ‘dplyr::combine’ when loading
‘isomiRs’
Warning: replacing previous import by ‘dplyr::desc’ when loading ‘isomiRs’
Warning: replacing previous import by ‘gplots::space’ when loading ‘isomiRs’
** help
I need to solve this to avoid warnings. I tried something like use
`importFrom` to only import some functions but don't know if importFrom
is something I shouldn't use or I should.
I would also appreciate very much if some one can point me to the right
way to solve the following:
* I failed to create good documentation for some functions, data of my
package. Can anyone point me to a good example of a dataset
documentation, so I could create a good one for my dataset example.
* I have some problems with my coding style, like sometimes I have `=`
insted of `<-` and I forgot to add spaces like this ` <- `. Any one
knows of a plugin for any editor to help me find that. Because I am
always missing some of them by eye.
Thanks a lot in advance for any help in any point.
Lorena
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