Sure, sorry. Its available on GitHub at thomasp85/FindMyFriends > Den 03/09/2015 kl. 16.57 skrev Dan Tenenbaum <dtene...@fredhutch.org>: > > > > ----- Original Message ----- >> From: "Dan Tenenbaum" <dtene...@fredhutch.org> >> To: "Thomas Lin Pedersen" <thomas...@gmail.com> >> Cc: bioc-devel@r-project.org >> Sent: Thursday, September 3, 2015 7:55:42 AM >> Subject: Re: [Bioc-devel] BiocCheck required import >> >> What's the name of the package? > > I mean, is the source available somewhere? > Dan > > >> Dan >> >> >> ----- Original Message ----- >>> From: "Thomas Lin Pedersen" <thomas...@gmail.com> >>> To: bioc-devel@r-project.org >>> Sent: Thursday, September 3, 2015 1:03:42 AM >>> Subject: [Bioc-devel] BiocCheck required import >>> >>> I’m polishing up a package for release and gets this “REQUIRED” >>> message from BiocCheck that kinds of baffles me: >>> >>> * REQUIRED: Packages (IRanges, Biostrings) which provide >>> reverse, >>> reverse (used in trailsToGraph, trailsToGraph) should be >>> imported >>> in the NAMESPACE file, otherwise packages that import >>> FindMyFriends could fail. >>> >>> This is the source code for trailsToGraph: >>> >>> trailsToGraph <- function(trails) { >>> trails <- unlist(lapply(trails, function(x) c(x, NA))) >>> edges <- data.frame(from = trails[-length(trails)], to = >>> trails[-1]) >>> edges <- edges[!is.na(edges$from) & !is.na(edges$to),] >>> edges <- edges %>% >>> group_by(from, to) %>% >>> summarise(weight = length(from)) >>> graph_from_data_frame(edges) >>> } >>> >>> I do not use reverse() anywhere in my code. Is this a bug in >>> BiocCheck or are there some requirements for imports with packages >>> that shares symbols, even though these symbols are not used? >>> >>> best >>> >>> Thomas >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >>
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