I see, thanks. Was just using an old version (wrong laptop), so missed the mapqFilter().
On Fri, Oct 16, 2015 at 5:10 AM, Morgan, Martin < martin.mor...@roswellpark.org> wrote: > > > > -----Original Message----- > > From: Bioc-devel [mailto:bioc-devel-boun...@r-project.org] On Behalf Of > > Michael Lawrence > > Sent: Friday, October 16, 2015 7:56 AM > > To: bioc-devel@r-project.org > > Subject: [Bioc-devel] ideas for ScanBamParam filters > > > > Maybe I just missed these, but these are a couple of things we could > filter > > by, in addition to what's there already: > > > > - Minimum MAPQ > > - Read group > > see tagFilter and mapqFilter args to ScanBamParam. I don't know how > heavily used these are so bugs welcome. > > Martin > > > > > The first is mostly for convenience, but the second should also benefit > > performance. > > > > I can help implement this, but wanted to make sure this is a reasonable > > approach. > > > > Michael > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > Bioc-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
