Hi,
I am experiencing troubles installing "Hmisc", especially its dependency
"acepack", via
> biocLite("acepack")
in R-devel installed from the "R-devel-mavericks-signed.pkg" downloaded
from https://r.research.att.com/.
The error reads:
BioC_mirror: https://bioconductor.org
Using Bioconductor 3.3 (BiocInstaller 1.21.1), R Under development (unstable)
(2015-11-16 r69640).
Installing package(s) acepack
Paket, das nur als Quelltext vorliegt und eventuell Übersetzung von
C/C++/Fortran benötigt.: acepack
Do you want to attempt to install these from sources?
y/n: y
installing the source package acepack
versuche URL 'https://cran.rstudio.com/src/contrib/acepack_1.3-3.3.tar.gz'
Content type 'application/x-gzip' length 33590 bytes (32 KB)
==================================================
downloaded 32 KB
* installing *source* package acepack ...
** Paket acepack erfolgreich entpackt und MD5 Summen überprüft
** libs
gfortran-4.8 -fPIC -g -O2 -c ace.f -o ace.o
make: gfortran-4.8: No such file or directory
make: *** [ace.o] Error 1
ERROR: compilation failed for package acepack
* removing
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/acepack
which indicates that "gfortran-4.8" is missing.
I have however installed the recommended "gfortran-5.2" for El Capitan
from here:
https://gcc.gnu.org/wiki/GFortranBinaries#MacOS
Yesterday, I tried quite some time to install 4.8-versions of gfortran
available from the website above, however they are not compatible with El
Capitan (Error reads: kern.osversion not recognized: »15.0.0) and searched
through several newsgroups reporting on that issue, I was however not able
to fix that.
Did anyone of the community here experienced similar issues and have some
suggestions for me!?
Thank you very much!
Best,
Ludwig
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