Dear Val, LDheatmap is not a bioconductor package as far as I know. Have you read through
https://cran.r-project.org/web/packages/LDheatmap/vignettes/LDheatmap.pdf This question could be posed to biostars if there is need for more assistance. bioc-devel is not appropriate for a question of this sort. Sincerely, Vincent Carey On Tue, Feb 9, 2016 at 10:28 PM, Val Krem via Bioc-devel < bioc-devel@r-project.org> wrote: > Hi all, > > I am trying to use the LDHeatmap die analysis of LD. > Genodata ID followed by the snps > > ID 1 2 2 1 2 2 1 .....1 > > ID 2 2 2 2 2 2 1 .....2 > ID 1 3 2 1 2 1 1 .....1 > > > The map data is > > Chr SNPID and Phiscal_location > > How do I proceed from here? > > thank you in advance > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
