Good day, Thank you for these two suggestions. I have questions about both options.
GPos seems to have a limit on the number of bases it can represent. I get an error: Error in GPos(samplingAreas) : too many genomic positions in 'pos_runs'. What exactly is this limit ? Could it be added to the documentation ? I used all of the human chromosomes. There is also no documentation of the sample function for GPos objects. Could regioneR be improved to consider strand ? It generates regions with no strand. I would like the regions to have a strand, since I have a strand-specific sequencing dataset, and for regions to be possibly chosen on the opposite strand to a masked region, such as when the genome is masked by transcripts for the purpose of choosing intergenic sequences. -------------------------------------- Dario Strbenac PhD Student University of Sydney Camperdown NSW 2050 Australia _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
