I'm seeing some odd behavior by the R CMD check command for my package, JunctionSeq.
http://bioconductor.org/checkResults/3.3/bioc-LATEST/JunctionSeq/zin2-checksrc.html It's not technically throwing warnings (just a "NOTE"), but it is claiming that there's no global definition for functions belonging to the default R packages (grDevices, utils, stats, and graphics). So I get lines like this: drawGene: no visible global function definition for 'plot.new' drawGene: no visible global function definition for 'plot.window' drawGene: no visible global function definition for 'par' drawGene: no visible global function definition for 'strwidth' drawGene: no visible global function definition for 'lines' drawGene: no visible global function definition for 'rect' drawGene: no visible global function definition for 'segments' drawGene: no visible global function definition for 'strheight' Since it's still able to compile the vignette and everything it's clearly not actually having a problem finding these functions at runtime, but I can't figure out what would cause it to throw these notes. I don't get these notes when I run R CMD check locally on any of my test machines (windows, CentOS5 linux and scientific linux 6). And I've had it build with no issues before. I can't see how my recent changes could possibly have caused this ... Has anyone ever seen this before? Regards, Steve Hartley [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
