Thanks for the pointer, I'll experiment and update my materials. Kasper
On Tue, Mar 29, 2016 at 2:43 PM, Hervé Pagès <hpa...@fredhutch.org> wrote: > Hi Dario, > > On 03/16/2016 04:00 AM, Dario Strbenac wrote: > >> Hello, >> >> I have a use case for which I notice other users have already asked about >> https://stat.ethz.ch/pipermail/bioconductor/2013-December/056400.html >> and >> http://kasperdanielhansen.github.io/genbioconductor/html/GenomicRanges_Rle.html#rles-and-granges >> I'm hoping that, by mentioning it again, it could be included in the future >> plans for GenomicRanges. It would be nice to avoid making loops for >> chromosomes and strands, which improves readability. >> > > Janet was asking about subsetting a RleList using a GRanges object. > I added this more than 2 years ago and it's documented (see last example > in ?GRanges). > > Kasper's section "Rles and GRanges" could benefit from an update showing > how to subset 'rl' by 'grView' instead of trying to create views on it. > > Creating views on a RleList object is not supported yet but could easily > be done in the same way that I've done it for views on a BSgenome > object (requested by Kasper 16 months ago): > > https://support.bioconductor.org/p/62749/ > > H. > > >> -------------------------------------- >> Dario Strbenac >> PhD Student >> University of Sydney >> Camperdown NSW 2050 >> Australia >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel