Dear all, I recently took up developing a workflow again (matEndToEnd).
http://docbuilder.bioconductor.org:8080/job/maEndToEnd/ While it builds fine on windows (winbuilder1) I get error message on linux (master) and mac (vagrantmac) that I cannot really trace down. 1.) On vagrantmac, it gives > * creating vignettes ... ERROR > Quitting from lines 36-43 (MA-Workflow.Rmd) > Error: processing vignette 'MA-Workflow.Rmd' failed with diagnostics: > unused arguments (filename, stop_on_error != 2) http://docbuilder.bioconductor.org:8080/job/maEndToEnd/label=vagrantmac/lastBuild/console Some searching revealed that this might be related to using a version of knitr that is too old: http://stackoverflow.com/questions/37241578/getting-a-parser-all-error-in-r-when-using-knitr-for-converting-a-basic-rmd-file 2.) On master the error is: > * installing the package to build vignettes > * creating vignettes ... ERROR > Error : .onLoad failed in loadNamespace() for 'BiocInstaller', details: > call: url(paste0(.protocol(), "//bioconductor.org/BiocInstaller.dcf")) > error: https:// URLs are not supported > Quitting from lines 76-109 (MA-Workflow.Rmd) http://docbuilder.bioconductor.org:8080/job/maEndToEnd/label=master/lastBuild/console potentially "old" package versions are a problem here as well? (All servers still seem to still use Bioc 3.2 in principle, but maybe there is some mixup between old and new? ) Thanks a lot and best wishes, Bernd _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel