The randomness of the errors is concerning, especially given that none
of these functions should be calling compiled code yet. Can you produce
a minimal working example that reproducibly triggers at least one of the
errors? And post your session information.
-Aaron
On 08/11/16 17:34, Ioannis Vardaxis wrote:
Hi,
I am trying to combine two GRanges from two anchors of same length in to a
Gitnteractions object and I get the following error:
PairedData=InteractionSet::GInteractions(anchor1=Anchor1,anchor2=Anchor2)
Error in .new_GInteractions(anchor1 = anchor1, anchor2 = anchor2, regions =
regions, :
first and second anchor vectors have different lengths
length(Anchor1)
[1] 33705839
length(Anchor2)
[1] 33705839
traceback()
5: stop(msg)
4: .new_GInteractions(anchor1 = anchor1, anchor2 = anchor2, regions = regions,
metadata = metadata, mode = mode)
3: .local(anchor1, anchor2, regions, ...)
2: InteractionSet::GInteractions(anchor1 = Anchor1, anchor2 = Anchor2)
1: InteractionSet::GInteractions(anchor1 = Anchor1, anchor2 = Anchor2)
While they clearly have the same length.
If I then run it again it works fine.
If I then run again one more time I get:
Error in .new_GInteractions(anchor1 = anchor1, anchor2 = anchor2, regions =
regions, :
all anchor indices must be finite integers
In addition: Warning message:
In new.pos[o] <- new.pos :
number of items to replace is not a multiple of replacement length
I run it again and I get the correct results.
It seems like it is quite random if I get en error or not.
--
Ioannis Vardaxis
Stipendiat IMF
NTNU
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