Hi, We need to make several updates to the mac machines. These are the last 2 builders that still need to move from the Hutch to RPCI. Because they are still at the Hutch, access to them is limited. We will get to these updates as soon as we can.
Valerie On 12/05/2016 01:27 PM, Dan Tenenbaum wrote: > Actually it looks like the version of java installed on morelia is 1.6. So it > appears that 1.7 (or higher) needs to be installed. > > Dan > > > ----- Original Message ----- >> From: "Zach Charlop-Powers" <zach.charlop.pow...@gmail.com> >> To: "Nan Xiao" <road2s...@gmail.com> >> Cc: "bioc-devel" <bioc-devel@r-project.org> >> Sent: Monday, December 5, 2016 1:02:52 PM >> Subject: Re: [Bioc-devel] Dependency update propagation (rcdk on morelia) >> Hi Nan, >> >> rCDK 3.3.6 requires Java8 and will throw error if the Java environment is >> incorrect. BioC Build only has Java7 hence the error. The new version of >> rCDK requires Java7. Once rcdk 3.3.8 makes it onto the BioC builds (its on >> CRAN), these errors should clear up. Please keep me posted if they don't. >> >> zach cp >> >> On Mon, Dec 5, 2016 at 3:43 PM, Nan Xiao <road2s...@gmail.com> wrote: >> >>> Hey guys, >>> >>> - it seems this problem is also affecting the other two Bioc packages >>> depending on rcdk, i.e. RMassBank and rcellminer (release + devel). Any >>> ideas why? >>> >>> Thanks, >>> -Nan >>> >>> On Fri, Dec 2, 2016 at 2:29 PM, Nan Xiao <road2s...@gmail.com> wrote: >>> >>>> Hi Bioc, >>>> >>>> - the Rcpi package depends on rcdk, and the rcdk package was updated last >>>> week from 3.3.6 to 3.3.8 on CRAN thanks to Zach's (cc'd) work, which >>>> removed the Java > 1.8 requirement (previously discussed in >>>> https://stat.ethz.ch/pipermail/bioc-devel/2016-October/009881.html ). >>>> >>>> I've updated the Rcpi package and specified the rcdk version to be >= >>>> 3.3.8, while the most recent Mac build gives the error: ( >>>> http://bioconductor.org/checkResults/release/bioc-LATEST/ >>>> Rcpi/morelia-buildsrc.html ) >>>> >>>> namespace 'rcdk' 3.3.6 is being loaded, but >= 3.3.8 is required. >>>> >>>> So it seems morelia is still using rcdk 3.3.6, while this >= 3.3.8 >>>> version requirement is fulfilled by Linux and Windows builds (if I >>>> understand correctly). >>>> >>>> Is there anything I could do to solve this issue? >>>> >>>> Thanks a lot, >>>> -Nan >>>> >>>> -- >>>> http://nanx.me >>>> >>> >>> >>> -- >>> http://nanx.me >>> >> [[alternative HTML version deleted]] >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
