Thanks Herv�. I will wait to do another version bump until all the servers are updated. Yes, the package suggests knitr. in order to build vignettes correctly.
Thanks - Juan Pablo ________________________________ From: Herv� Pag�s <hpa...@fredhutch.org> Sent: Tuesday, February 14, 2017 11:26 PM To: Romero, Juan Pablo; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Problem on malbec2 server Hi Juan Pablo, We just updated R on malbec2 a couple of hours ago and kintr has not been re-installed yet. Please make sure that your package suggests knitr otherwise the Single Package Builder has no way to know that knitr needs to be installed before trying to run 'R CMD build' or 'R CMD check' on your package. Thanks, H. On 02/14/2017 01:01 PM, Romero, Juan Pablo wrote: > Hi everyone, > > I did a minor update to the package I'm currently developing and the build > report shows an error on malbec2 server: > > * checking for file EventPointer/DESCRIPTION ... OK > * preparing EventPointer: > * checking DESCRIPTION meta-information ... OK > Error in loadVignetteBuilder(pkgdir, TRUE) : > vignette builder 'knitr' not found > Execution halted > > Could this be related with a problem in the server? A few hours ago I did a > build and it completed without errors and warnings so, > I doubt that the version bump (Updated a link on the package vignette) caused > this problem. > > Thank you. > > Juan Pablo > > > > [[alternative HTML version deleted]] > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > -- Herv� Pag�s Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax: (206) 667-1319 [[alternative HTML version deleted]]
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