Anyone have any ideas for how to debug this? I get an error from the tximport vignette on tokay2, but I can't figure out what could be the issue:
... 1 Quitting from lines 185-189 (tximport.Rmd) Error: processing vignette 'tximport.Rmd' failed with diagnostics: cannot open the connection Execution halted http://master.bioconductor.org/checkResults/devel/bioc-LATEST/tximport/tokay2-buildsrc.html Those lines look innocuous to me, and work fine on Linux and Mac: 184 ```{r} 185 files <- file.path(dir,"sailfish", samples$run, "quant.sf") 186 names(files) <- paste0("sample",1:6) 187 txi.sailfish <- tximport(files, type="sailfish", tx2gene=tx2gene) 188 head(txi.sailfish$counts) 189 ``` I tried bumping the version and I still get the error from tokay2. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel