Are these permanent system files or files that are created during examples/vignettes?
Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Aimin Yan <aimin.at.w...@gmail.com> Sent: Tuesday, April 4, 2017 3:41:02 PM To: Shepherd, Lori Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Check error on malbec2 Thank you, I changed to use tempdir(), and it works now. One more question is how to locate those outputs in temporary directory since I want users to use those outputs. Aimin On Tue, Apr 4, 2017 at 2:00 PM, Shepherd, Lori <lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org>> wrote: Write and access your output to a temporary directory instead using tempdir(). Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org>> on behalf of Aimin Yan <aimin.at.w...@gmail.com<mailto:aimin.at.w...@gmail.com>> Sent: Tuesday, April 4, 2017 1:45:28 PM To: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> Subject: [Bioc-devel] Check error on malbec2 In the package I am trying ti submit to bioconductor, I got the following error for check. Warning in dir.create(output.file.dir) : cannot create dir '/home/pkgbuild/OutputEnmap', reason 'Permission denied' Warning in file(file, ifelse(append, "a", "w")) : cannot open file '/home/pkgbuild/OutputEnmap/enrichmap_GO.xls': No such file or directory Error in file(file, ifelse(append, "a", "w")) : cannot open the connection Calls: enrichmentmap -> write.table -> file It seems I do not have permission to create a directory. Does anyone know how to fix this check error? Thanks, Aimin [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
