You can always use biocLite(pkg , lib="path/to/library") . The lib path in biocLite defaults to the .libPaths()[1]. When you do .libPaths() upon opening R does your path appear that you set with the environment variables?
Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Guillaume MULLER <g...@presans.com> Sent: Tuesday, April 11, 2017 8:28:34 AM To: Shepherd, Lori; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Installing EBImage with custom packages dir? Hi, Thanks for your answer. The R_LIBS and R_LIBS_USER environment variables are already set in my ~/.Renviron . They point to the correct location. But this latter is not selected when installing packages with biocLite()... Cheers GM -- Guillaume MULLER, PhD PRESANS - Remix Coworking - L'Appart 57 rue de Turbigo 75003 Paris France http://www.presans.com http://feeds.feedburner.com/OYI/fr This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel