I see the binaries on the respective web pages, but biocLite seems not to: > biocLite() BioC_mirror: https://bioconductor.org Using Bioconductor 3.5 (BiocInstaller 1.26.0), R 3.4.0 (2017-04-21). installation path not writeable, unable to update packages: foreign Old packages: 'AnnotationDbi', 'Biobase', 'BiocGenerics', 'biomaRt', 'IRanges', 'S4Vectors' Update all/some/none? [a/s/n]: a
There are binary versions available but the source versions are later: binary source needs_compilation AnnotationDbi 1.37.4 1.38.0 FALSE Biobase 2.35.1 2.36.0 TRUE BiocGenerics 0.21.3 0.22.0 FALSE biomaRt 2.31.10 2.32.0 FALSE IRanges 2.9.19 2.10.0 TRUE S4Vectors 0.13.17 0.14.0 TRUE Do you want to install from sources the packages which need compilation? y/n: > sessionInfo() R version 3.4.0 (2017-04-21) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 14393) Matrix products: default locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] BiocInstaller_1.26.0 loaded via a namespace (and not attached): [1] compiler_3.4.0 tools_3.4.0 -- James W. MacDonald, M.S. Biostatistician University of Washington Environmental and Occupational Health Sciences 4225 Roosevelt Way NE, # 100 Seattle WA 98105-6099 [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel