Hi Jianhong, I can't reproduce this but I'm using R 3.4.0. You seem to be using Bioc devel (aka BioC 3.6) with R devel. This is not supported. Both, BioC 3.5 (current release) and BioC 3.6 require R 3.4.0.
Cheers, H. On 05/11/2017 01:11 PM, Ou, Jianhong wrote:
I got error when I try order for Rle object by following codes: library("BiocGenerics") library(XVector) order(Rle(1)) ## Error in match.arg(method) : 'arg' must be of length 1sessionInfo()R Under development (unstable) (2017-05-10 r72667) Platform: x86_64-apple-darwin16.5.0 (64-bit) Running under: macOS Sierra 10.12.4 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets [8] methods base other attached packages: [1] XVector_0.17.0 IRanges_2.11.2 S4Vectors_0.15.1 [4] BiocGenerics_0.23.0 loaded via a namespace (and not attached): [1] zlibbioc_1.23.0 compiler_3.5.0 Is this a bug? Or I should always add method argument? Yours Sincerely, Jianhong Ou TEL: 508-856-5379 LRB 608 Bioinformatician of Bioinformatics core at Department of Molecular, Cell and Cancer Biology UMASS Medical School 364 Plantation Street Worcester, MA 01605 Confidentiality Notice: This e-mail message, including any attachments, is for the sole use of the intended recipient(s) and may contain confidential, proprietary and privileged information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender immediately and destroy or permanently delete all copies of the original message. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_bioc-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=FhYaKPjNM3nCK5wrqNrek8IgmU7YlJH8B77AMM77j7U&s=N1wtJXFb6nsvQncKFe8tgzi_q8NunVLhu-gJoQA_Co8&e=
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