Dear bioc-devel,
I would like to import Hsapiens objects from both
BSgenome.Hsapiens.UCSC.hg19
and
BSgenome.Hsapiens.UCSC.hg38
this is currently handled in the namespace of my package by
import(BSgenome.Hsapiens.UCSC.hg19)
import(BSgenome.Hsapiens.UCSC.hg38)
I get warning (because I assign two different genomes to Hsapiens
variable):
Warning: replacing previous import ‘BSgenome.Hsapiens.UCSC.hg19::Hsapiens’
by ‘BSgenome.Hsapiens.UCSC.hg38::Hsapiens’ when loading ‘RareVariantVis’
Could you suggest how to avoid this warning? I would like to use both hg19
and hg38 references in my package.
Packages are listed in my Description file under Imports:. Furthermore, I
use them as BSgenome.Hsapiens.UCSC.hg38::Hsapiens in my code.
Kind regards,
--
Tomasz Stokowy Phd
Senior Engineer
Department of Clinical Science
University of Bergen, Norway
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