Dear Martin, > On 11 Oct 2017, at 13:05, Martin Morgan <martin.mor...@roswellpark.org> wrote: > > On 10/11/2017 03:48 AM, Rainer Johannes wrote: >> Hi, >> would it be possible to increase the allowed build and check times for mzR >> on Windows? Building mzR takes very long due to the compilation of the >> included proteowizard (and boost?) code so there is not much we can do to >> speed that up. > > what's the role of proteowizard in mzR? is it required in its entirety, or > can it be more selectively included? I agree that mzR is often problematic > because of the excessive compilation time. >
mzR uses Rcpp modules to directly call/use the C++ code from proteowizard to read mzML, mzXML and other MS file formats. Regarding selective includes: I believe Steffen Neumann and Laurent Gatto spent already a great deal of time to reduce the amount of code that needs to be included for mzR to compile/work. I think there is not much more that can be done here, unfortunately. jo > Martin > >> On linux and macOS all is fine, but we get TIMEOUT errors on a regular basis >> on Windows (I guess because it has to be compiled for i386 and x86_64). The >> problem is that a failing mzR causes all packages depending on it (like >> MSnbase and xcms) to fail too. >> cheers, jo >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
