Dear Martin,
On Fri, 13-October-2017, at 12:27:31, Martin Morgan <martin.mor...@roswellpark.org> wrote: > On 10/12/2017 07:08 AM, Ramon Diaz-Uriarte wrote: >> Dear All, >> >> I have noticed that on the latest build report, a package I maintain, >> OncoSimulR >> (http://bioconductor.org/checkResults/devel/bioc-LATEST/OncoSimulR/veracruz1-buildsrc.html), > > I wonder if it is this issue > > https://github.com/Bioconductor/BiocParallel/issues/67 > > which would occur if your vignette has parallel code (using 'fork' > processed via parallel::mclapply or indirectly via > BiocParallel::MulticoreParam() / doParallel etc.) > Yes! I have both explicit calls to mclapply and implicit ones (functions that call functions that call mclapply) in the vignette. > If so then the best strategy is to wait for an upstream fix. > OK. Thank you. Best, R. > Martin > > >> has status timeout on veracruz1. Package building stalls during >> creation of the vignette (that is not happening in the malbec1 ---linux--- >> build). I have noticed that this same pattern (timeout with build stopped >> when >> creating the vignette in veracruz1 but not in malbec1) seems to affect >> other packages >> (http://bioconductor.org/checkResults/devel/bioc-LATEST/index.html#show=timeout). >> >> Is there anything we should do? Just looking at the log I do not know how >> to proceed. >> >> >> Thanks, >> >> >> R. >> >> >> >> -- >> Ramon Diaz-Uriarte >> Department of Biochemistry, Lab B-25 >> Facultad de Medicina >> Universidad Autónoma de Madrid >> Arzobispo Morcillo, 4 >> 28029 Madrid >> Spain >> >> Phone: +34-91-497-2412 >> >> Email: rdia...@gmail.com >> ramon.d...@iib.uam.es >> >> http://ligarto.org/rdiaz >> >> _______________________________________________ >> Bioc-devel@r-project.org mailing list >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. -- Ramon Diaz-Uriarte Department of Biochemistry, Lab B-25 Facultad de Medicina Universidad Autónoma de Madrid Arzobispo Morcillo, 4 28029 Madrid Spain Phone: +34-91-497-2412 Email: rdia...@gmail.com ramon.d...@iib.uam.es http://ligarto.org/rdiaz _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
