Dear developers, I have stumbled upon issues with our package vignette. In the windows build:
* creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.6-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1 ERROR Invalid Parameter - /figure-html Warning: running command 'C:\Windows\system32\cmd.exe /c convert "intro_files/figure-html/unnamed-chunk-2-1.png" -trim "intro_files/figure-html/unnamed-chunk-2-1.png"' had status 4 Warning in shell(paste(c(cmd, args), collapse = " ")) : 'convert "intro_files/figure-html/unnamed-chunk-2-1.png" -trim "intro_files/figure-html/unnamed-chunk-2-1.png"' execution failed with error code 4 Also: Warning: 'latex2' is deprecated. Use 'latex' instead.And: Warning: running command '"C:\PROGRA˜1\MIKTEX˜1.9\miktex\bin\x64\texify.exe" --quiet --pdf "diffuStats.tex" --max-iterations=20 -I "C:/Users/biocbuild/bbs-3.6-bioc/R/share/texmf/tex/latex" -I "C:/Users/biocbuild/bbs-3.6-bioc/R/share/texmf/bibtex/bst"' had status 1 Error in find_vignette_product(name, by = "texi2pdf", engine = engine) : Failed to locate the 'texi2pdf' output file (by engine 'utils::Sweave') for vignette with name 'diffuStats'. The following files exist in directory '.': 'bibliography.bib', 'diffuStats-03_diff2.pdf', 'diffuStats-03_diff3.pdf', 'diffuStats-04_plot.pdf', 'diffuStats-05_plot.pdf', 'diffuStats-concordance.tex', 'diffuStats.Rnw', 'diffuStats.tex', 'diffustats_fig_overview.eps', 'diffustats_fig_profiling.eps', 'intro.R', 'intro.Rmd', 'intro.html' This keeps me worried as (1) I cannot reproduce it, (2) I don't recall changes that can trigger this, and (3) next release is this month. Can this be related to the build system or is it a bug that I should fix? Thank you, Sergio [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel