> > I can reproduce the error with > > clusterExperiment/vignettes master$ R_DEFAULT_PACKAGES= LC_COLLATE=C R -f > clusterExperimentTutorial.R > > leading to > > > ## > > ----recallRSEC------------------------------------------------------------ > > rsecFluidigm<-RSEC(rsecFluidigm,isCount=TRUE,combineProportion=0.6,mergeMethod="JC",mergeCutoff=0.05) > Error in validObject(.Object) : > invalid class "ClusterExperiment" object: merge_nodeMerge must be data.frame > with 4 columns and column names equal to: > 'Node','Contrast','isMerged','mergeClusterId' > Calls: RSEC ... .local -> new -> initialize -> initialize -> validObject > Execution halted > > and then for work inside R > > > clusterExperiment/vignettes$ R_DEFAULT_PACKAGES= LC_COLLATE=C R > Bioconductor version 3.6 (BiocInstaller 1.27.7), ?biocLite for help > > source("clusterExperimentTutorial.R", echo=TRUE, max=Inf) > > Does that set you down the right path? > > Martin >
Yes, thank you!!! I can get it in the interactive session now. Elizabeth _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel