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You will need to bump the version in the description file each time you would like a new build report so please make the bump from 0.99.0 to 0.99.1. Thank you. Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Ioannis Vardaxis <ioannis.varda...@ntnu.no> Sent: Friday, October 27, 2017 1:22:26 PM To: Herv� Pag�s; bioc-devel@r-project.org Subject: Re: [Bioc-devel] FW: Package build error Hey, One quick question. When I push again now, do I need to change the version from 0.99.0 to 0.99.1 or does it change automatically? Best, -- Ioannis Vardaxis Stipendiat IMF NTNU On 27/10/2017, 19:03, "Herv� Pag�s" <hpa...@fredhutch.org> wrote: >Adding 'SystemRequirements: C++11' works for me (I'm on Linux): > >hpages@latitude:~/MACPET$ git diff >diff --git a/DESCRIPTION b/DESCRIPTION >index d8238b6..061d692 100644 >--- a/DESCRIPTION >+++ b/DESCRIPTION >@@ -7,6 +7,7 @@ Author: Ioannis Vardaxis > Maintainer: Ioannis Vardaxis <ioannis.varda...@ntnu.no> > Description: The MACPET package can be used for binding site analysis >for ChIA-PET data. MACPET reads ChIA-PET data in BAM or SAM for > License: GPL-3 >+SystemRequirements: C++11 > Encoding: UTF-8 > LazyData: true > ByteCompile: true > > >hpages@latitude:~$ Rbiocdev CMD INSTALL MACPET >* installing to library '/home/hpages/R/R-3.4.2-bioc36/library' >* installing *source* package 'MACPET' ... >** libs >g++ -std=gnu++11 -I/home/hpages/R/R-3.4.2-bioc36/include -DNDEBUG >-I"/home/hpages/R/R-3.4.2-bioc36/library/Rcpp/include" >-I/usr/local/include -fpic -g -O2 -c >PeakFinderSubFunctions_SGT_Rcpp.cpp -o PeakFinderSubFunctions_SGT_Rcpp.o >g++ -std=gnu++11 -I/home/hpages/R/R-3.4.2-bioc36/include -DNDEBUG >-I"/home/hpages/R/R-3.4.2-bioc36/library/Rcpp/include" >-I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o >g++ -std=gnu++11 -shared -L/home/hpages/R/R-3.4.2-bioc36/lib >-L/usr/local/lib64 -o MACPET.so PeakFinderSubFunctions_SGT_Rcpp.o >RcppExports.o -L/home/hpages/R/R-3.4.2-bioc36/lib -lR >installing to /home/hpages/R/R-3.4.2-bioc36/library/MACPET/libs >** R >** inst >** byte-compile and prepare package for lazy loading >** help >... > >Works for other BioC packages too e.g. InteractionSet >(showing compilation output on Mac): > > >https://bioconductor.org/checkResults/3.6/bioc-LATEST/InteractionSet/verac >ruz1-install.html > >It would be more useful if you showed us the full output of >'R CMD INSTALL'. > >But you should not hesitate to add 'SystemRequirements: C++11', bump >the version, and see what the single package builder says (provide the >link if you want to discuss it). > >Thanks, >H. > > >On 10/27/2017 09:50 AM, Ioannis Vardaxis wrote: >> Hey again, >> >> >> I think I have fixed the \insertRef macro problem now. However I still >> need help with the c++11 problems I mentioned in the previous email. >> >> My package builds and R-checks (and BiocChecks) with no errors and >>warning >> though. I get some notes from BiocCheck but I don¹t think they are of >> immediate importance. >> >> Best, >> > >-- >Herv� Pag�s > >Program in Computational Biology >Division of Public Health Sciences >Fred Hutchinson Cancer Research Center >1100 Fairview Ave. N, M1-B514 >P.O. Box 19024 >Seattle, WA 98109-1024 > >E-mail: hpa...@fredhutch.org >Phone: (206) 667-5791 >Fax: (206) 667-1319 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]]
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