Hi Nitesh, It seems that the bug fixes I made to my software are still not updated in the Bioconductor page. I bumped the version to 1.4.1 but I still find the version to be 1.4.0
https://www.bioconductor.org/packages/3.6/bioc/html/CountClust.html Didn't the build go through? Thanks Kushal On 1 November 2017 at 16:45, kushal kumar dey <kshl...@gmail.com> wrote: > Thanks so much for the help. I did manage to push with the SSH protocol. > Will wait till the next build to see if it went through. > > Best > > Kushal > > On 1 November 2017 at 16:18, Turaga, Nitesh <nitesh.tur...@roswellpark.org > > wrote: > >> Hi Kushal, >> >> You also need to use the “SSH” protocol, and not the “HTTPS” protocol. >> >> Your upstream should be g...@git.bioconductor.org:packages/CountClust >> >> Best, >> >> Nitesh >> >> > On Nov 1, 2017, at 5:06 PM, Turaga, Nitesh >> <nitesh.tur...@roswellpark.org> wrote: >> > >> > Hi Kushal, >> > >> > Can you please try, >> > >> > ssh -T g...@git.bioconductor.org -v >> > >> > >> > Are you using the correct private key to your corresponding public key >> on our machine? >> > >> > If not, please check the FAQ section bioconductor.org/developers/ho >> w-to/git/faq/ point#15. You can set up a config file to use the correct >> private key. >> > >> > A snippet of your public key on our machine is, >> > >> > ssh-rsa AAAAB3NzaC1yc2EAAAADAQABAAACAQC8EgObkc/OI4nc8NE0sL4COb6uNaBI >> URhJoSyisz8i8/KWum0xFhav7ouDpMoZz0lgnlRaIYIRquJx0R44ojDcsN45 >> TBR8Rna4PNBscVJEsbonD0k3wi2OBySgwxTzL5aZl99HzuAzthAPzFuskZDH >> ahws9sPUtWMxioI6D5ZktVOb/QJbDJdFHFPXcd8l90wRJN0eGJXX9excJBDU >> 57ufEgDBx9vGv85GTwJjP4UQYLyjDIap2CbrdC+7nJ95fa7YcNUj2znVFcrNnkW9 >> > >> > Best, >> > >> > Nitesh >> > >> > >> >> On Nov 1, 2017, at 2:23 PM, kushal kumar dey <kshl...@gmail.com> >> wrote: >> >> >> >> Hi Herve, >> >> >> >> Thanks for clarifying on the matter. I followed your instructions and >> did *git >> >> cherry-pick* to make the following changes >> >> >> >> - fix a bug in one of the functions >> >> - add a citation >> >> - fix the readme >> >> >> >> I bumped the version number from 1.4.0 to 1.4.1 and tried to push to >> the >> >> release branch, but I when I run the command, >> >> >> >> git push upstream RELEASE_3_6 >> >> >> >> I meet with the following error >> >> >> >> *fatal: remote error: FATAL: W any packages/CountClust nobody DENIED by >> >> fallthru* >> >> >> >> *(or you mis-spelled the reponame)* >> >> >> >> >> >> You can check the branch I want to push on my Github >> >> >> >> >> >> >> >> *https://github.com/kkdey/CountClust/tree/RELEASE_3_6 >> >> <https://github.com/kkdey/CountClust/tree/RELEASE_3_6>* >> >> >> >> >> >> This is my output from *git remote -v * >> >> >> >> *origin https://github.com/kkdey/CountClust.git >> >> <https://github.com/kkdey/CountClust.git> (fetch)* >> >> >> >> *origin https://github.com/kkdey/CountClust.git >> >> <https://github.com/kkdey/CountClust.git> (push)* >> >> >> >> *upstream https://git.bioconductor.org/packages/CountClust >> >> <https://git.bioconductor.org/packages/CountClust> (fetch)* >> >> >> >> *upstream https://git.bioconductor.org/packages/CountClust >> >> <https://git.bioconductor.org/packages/CountClust> (push)* >> >> >> >> >> >> Can you please let me know what I am doing wrong here and how I can >> update >> >> the release version? >> >> >> >> >> >> Thank you so much! >> >> >> >> >> >> Kushal >> >> >> >> >> >> >> >> >> >> >> >> On 30 October 2017 at 17:50, Hervé Pagès <hpa...@fredhutch.org> wrote: >> >> >> >>> Hi Kushal, >> >>> >> >>> If you push changes without bumping the version of your package, >> >>> the update won't propagate. >> >>> >> >>> You only bumped the version to 1.5.1 today so you need to wait >> >>> about 24 hours before seeing this reflected on the landing page >> >>> for CountClust. >> >>> >> >>> Also please note that you did the version bump plus a few other >> >>> commits (6 commits in total) in master today **after** we created >> >>> the RELEASE_3_6 branch so these changes will only propagate to >> >>> BioC 3.7 (the new devel version of BioC, starting tomorrow). >> >>> If you want these changes to also propagate to the BioC 3.6 release >> >>> you'll need to push them to the RELEASE_3_6 branch. This is >> >>> typically done with 'git cherry-pick' as documented here: >> >>> >> >>> >> >>> https://bioconductor.org/developers/how-to/git/bug-fix-in- >> >>> release-and-devel/ >> >>> >> >>> Cheers, >> >>> H. >> >>> >> >>> >> >>> On 10/30/2017 02:41 PM, kushal kumar dey wrote: >> >>> >> >>>> Hi all, >> >>>> >> >>>> I am the author and maintainer of the CountClust package. I recently >> >>>> submitted an update (version 1.5.1) to the package through >> >>>> Bioconductor Git and I can access this updated version when I clone >> the >> >>>> source repository >> >>>> >> >>>> git clone https://urldefense.proofpoint. >> com/v2/url?u=https-3A__git.bio >> >>>> conductor.org_packages_CountClust&d=DwICAg&c=eRAMFD45gAfqt84 >> >>>> VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=-x3S >> >>>> 8Sl0fsASITg_-ULMYIykoPk6Y0PqK2NoRjC43iA&s=YBM0DldFbCkrEBnHaB >> >>>> n5X8-jb1yhm_GmSUWL6SIGLmo&e= >> >>>> >> >>>> However, the updated version is not available in the official >> Bioconductor >> >>>> 3.6 page, which still shows the version 1.3.0. >> >>>> >> >>>> https://urldefense.proofpoint.com/v2/url?u=https-3A__www.bio >> >>>> conductor.org_packages_3.6_bioc_html_CountClust.html&d=DwICA >> >>>> g&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvS >> >>>> XAJJKaaPhzWA&m=-x3S8Sl0fsASITg_-ULMYIykoPk6Y0PqK2NoRjC43iA& >> >>>> s=UfPX4T5l4JBfXBumCcQ-5YOm59i_xfX2OEILrQ3I2u0&e= >> >>>> >> >>>> Can you please let me know if the page has not been updated for the >> >>>> packages yet or if I would need to do something at my end to update >> the >> >>>> version reported on the page? >> >>>> >> >>>> Thanks so much >> >>>> >> >>>> >> >>> -- >> >>> Hervé Pagès >> >>> >> >>> Program in Computational Biology >> >>> Division of Public Health Sciences >> >>> Fred Hutchinson Cancer Research Ce >> >>> <https://maps.google.com/?q=n+Cancer+Research+Ce&entry=gmail&source=g >> >nter >> >>> 1100 Fairview Ave. N, M1-B514 >> >>> P.O. Box 19024 >> >>> Seattle, WA 98109-1024 >> >>> >> >>> E-mail: hpa...@fredhutch.org >> >>> Phone: (206) 667-5791 >> >>> Fax: (206) 667-1319 >> >>> >> >> >> >> >> >> >> >> -- >> >> Kushal K. Dey >> >> Graduate Student >> >> 5 th Year, Department of Statistics >> >> University of Chicago >> >> Contact: +1 312-709-0680 <+1%20312-709-0680> | kk...@uchicago.edu >> >> >> >> [[alternative HTML version deleted]] >> >> >> >> _______________________________________________ >> >> Bioc-devel@r-project.org mailing list >> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> > >> > >> > >> > This email message may contain legally privileged and/or confidential >> information. If you are not the intended recipient(s), or the employee or >> agent responsible for the delivery of this message to the intended >> recipient(s), you are hereby notified that any disclosure, copying, >> distribution, or use of this email message is prohibited. If you have >> received this message in error, please notify the sender immediately by >> e-mail and delete this email message from your computer. Thank you. >> > _______________________________________________ >> > Bioc-devel@r-project.org mailing list >> > https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> >> >> This email message may contain legally privileged and/or confidential >> information. If you are not the intended recipient(s), or the employee or >> agent responsible for the delivery of this message to the intended >> recipient(s), you are hereby notified that any disclosure, copying, >> distribution, or use of this email message is prohibited. If you have >> received this message in error, please notify the sender immediately by >> e-mail and delete this email message from your computer. Thank you. >> > > > > -- > Kushal K. Dey > Graduate Student > 5 th Year, Department of Statistics > University of Chicago > Contact: +1 312-709-0680 | kk...@uchicago.edu > -- Kushal K. Dey Graduate Student 5 th Year, Department of Statistics University of Chicago Contact: +1 312-709-0680 | kk...@uchicago.edu [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
