Hi, thanks for the answer, unfortunately not exactly what I meant. To be more precise:
I want to point Galaxy to download (test) MS data files from either the faahKO package, or msdata or mtbls2 in BioC. For that I need an ftp/http/https link to the files, and I was able to use https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/msdata/inst/cdf/ko15.CDF (which still works, but is probably outdated) So is there anything equivalent in the new git setup ? Yours, Steffen On Fri, 2017-11-17 at 04:31 -0500, Martin Morgan wrote: > On 11/17/2017 04:08 AM, Neumann, Steffen wrote: > > Hi, > > > > I would like to have a URL to individual files > > we have in BioC packages. This is useful > > e.g. if I need test data from, say, the msdata package, > > in another context. > > > > In the SVN days, I was able to point directly > > into the SVN repo with readonly:readonly access. > > We also had the (now deprecated) way to link to: > > https://raw.githubusercontent.com/Bioconductor-mirror/xcms/master/D > > ESCRIPTION > > > > -> Is there anything comparable today ? > > I think the git archive command might do the trick, but it requires > ssh > (i.e., write) access to the repository > > git archive --remote=g...@git.bioconductor.org:packages/xcms \ > master DESCRIPTION | tar -xf - > > > > > > It could be as simple as a directory tree > > of a working copies of all https://git.bioconductor.org/ > > served by the apache (or whatever) web server, > > or (a bit cooler) a gitweb or similar http interface. > > > > Wouldn't that be a fantastic christmas present > > for us users and developers :-) ? > > > > Yours, > > Steffen > > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the > employee or agent responsible for the delivery of this message to the > intended recipient(s), you are hereby notified that any disclosure, > copying, distribution, or use of this email message is > prohibited. If you have received this message in error, please > notify the sender immediately by e-mail and delete this email message > from your computer. Thank you. -- IPB Halle AG Massenspektrometrie & Bioinformatik Dr. Steffen Neumann http://www.IPB-Halle.DE Weinberg 3 http://msbi.bic-gh.de 06120 Halle Tel. +49 (0) 345 5582 - 1470 +49 (0) 345 5582 - 0 sneumann(at)IPB-Halle.DE Fax. +49 (0) 345 5582 - 1409 _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel