Would be great, Steffen, to update mzR to use Rhdf5lib. I believe CRAN packages with mzR dependencies are also failing to build under devel, as well as xcms and other mzR dependencies in Bioc.

Martin

On 01/03/2018 04:18 AM, Mike Smith wrote:
Rhdf5lib is in the release branch too.  I'm happy to help try and get mzR
working with it.

On 2 January 2018 at 21:31, Martin Morgan <martin.mor...@roswellpark.org>
wrote:

On 01/02/2018 03:16 PM, Neumann, Steffen wrote:

Dear BioC team,

a happy new year to you as well ;-)

for a while we have a build error for mzR on windows
due to missing HDF5 libs:
https://github.com/sneumann/mzR/issues/143

I am looking for some hints how to fix this.
The https://bioconductor.org/packages/release/bioc/html/rhdf5.html
package has embedded rhdf5/src/libwin/x64/libhdf5ForBioC-7.dll
which we could try to use (It does not yet contain H5Cpp.h,
and we'd have to ask Bernd Fischer et al to include it.


Not a comprehensive answer or solution to release, but in devel there is
Rhdf5lib which contains both the C and C++ headers. (I believe that rhdf5
will move to using this library in the near future) Martin


ALternatively, it might already be present on the build machines,
but we didn't have the include path set up:
https://github.com/r-hub/rhub/issues/91
"... the location of the hdf5 libraries is defined as
${LIB_HDF5}/lib${R_ARCH}. "

So, any hints which way to go for a fix ?

Yours,
Steffen



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