Hi Kevin, It seems you have lost a few commits which are important in tracking RELEASE’s in Bioconductor.
commit fb5868c2fdfa607b52e467881212b3619a8b0ae9 (HEAD -> master) Author: Hervé Pagès <hpa...@fredhutch.org> Date: Mon Oct 30 12:52:08 2017 -0400 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch commit 46e0a56d1117cca6274fea3b8430eb8d6c7a9976 (RELEASE_3_6) Author: Hervé Pagès <hpa...@fredhutch.org> Date: Mon Oct 30 12:39:24 2017 -0400 bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch These commits are important. Please wait for further instructions while we figure out how to resolve this issue. Best, Nitesh > On Jan 7, 2018, at 1:20 PM, Kevin Horan <kho...@cs.ucr.edu> wrote: > > Nitesh, > > I have pushed changes to both the master and RELEASE_3_6 branches now. > > Kevin > > > On 01/05/2018 11:14 AM, Turaga, Nitesh wrote: >> Hi Kevin, >> >> Please overlay the commits so that we can get your package building on our >> build machines. >> >> Please do this soon. You also have to make RELEASE_3_6 branch now. >> >> We have skipped your package for now, and it won’t show up in the release >> report. >> Thanks >> >> Nitesh >> >>> On Jan 4, 2018, at 10:07 AM, Turaga, Nitesh <nitesh.tur...@roswellpark.org> >>> wrote: >>> >>> Hi Kevin, >>> >>> I have your package reset to this commit >>> e3a8d2122a65305c478276e538faace277ea9ed6. >>> >>> Please check. You will need to overlay all the commits including the new >>> release on top of this (RELEASE_3_6). >>> >>> If you have any questions further on this, please ask before pushing to >>> Bioconductor. >>> >>> Best, >>> >>> Nitesh >>> >>>> On Jan 3, 2018, at 7:10 PM, Kevin Horan <kho...@cs.ucr.edu> wrote: >>>> >>>> Nitesh, >>>> >>>> That sounds great, thanks. >>>> >>>> Kevin >>>> >>>> >>>> On 01/03/2018 01:53 PM, Turaga, Nitesh wrote: >>>>> Hi Kevin, >>>>> >>>>> I can help you with this. I can take you back to a state before August >>>>> 18th and put that repository up on our Git server. >>>>> >>>>> From that point onwards you’d have to reapply all the changes on that >>>>> repository from "commit ae93b1e9bcc574b5c8e9fc13b914286464ff4389" and >>>>> onwards. >>>>> >>>>> commit ae93b1e9bcc574b5c8e9fc13b914286464ff4389 >>>>> Merge: 643e470 f1785fb >>>>> Author: tgirke <tgi...@citrus.ucr.edu> >>>>> Date: Sat Aug 19 16:32:35 2017 -0700 >>>>> >>>>> resolved conflicts >>>>> >>>>> I can do this tomorrow and send you an email. >>>>> >>>>> >>>>> Best, >>>>> >>>>> Nitesh >>>>> >>>>> >>>>> >>>>> >>>>>> On Jan 3, 2018, at 4:28 PM, Kevin Horan <kho...@cs.ucr.edu> wrote: >>>>>> >>>>>> Nitesh, >>>>>> >>>>>> I tried to re-construct the repo starting from what is left in the SVN >>>>>> repository, but I couldn't get all the branches to come over and it just >>>>>> generally looks too different to easily replace the bioc repo. >>>>>> >>>>>> I was thinking though, if its easy for you to clobber the current bioc >>>>>> repo for ChemmineR and re-create it from the old SVN repo (ie, because >>>>>> you might have scripts from having done it the first time), then that >>>>>> might be an easier fix. Then I can check it out, apply the recent >>>>>> changes and push it back. >>>>>> >>>>>> But if you don't think that's a good idea, then I'll take your offer >>>>>> of help and we can try to figure out how to get rid of the duplicate >>>>>> commits. Thanks. >>>>>> >>>>>> >>>>>> Kevin >>>>>> >>>>>> >>>>>> On 01/03/2018 11:55 AM, Turaga, Nitesh wrote: >>>>>>> Hi Kevin, >>>>>>> >>>>>>> I’ll try to help you. I’ll take a look at your package and get back to >>>>>>> you. Please forward this message to bioc-devel so that it’s public and >>>>>>> other maintainers/users know that there is an issue with your package. >>>>>>> >>>>>>> Best, >>>>>>> >>>>>>> Nitesh >>>>>>> >>>>>>>> On Jan 3, 2018, at 2:31 PM, Kevin Horan <kho...@globalrecordings.net> >>>>>>>> wrote: >>>>>>>> >>>>>>>> Nitesh, >>>>>>>> >>>>>>>> I am one of the maintainers for the ChemmineR package on >>>>>>>> bioconductor. I have a bad duplicate commit problem I was wondering if >>>>>>>> you could help me with. Basically, it seems one string of 1000 or so >>>>>>>> commits has been duplicated twice in the repository, so that there are >>>>>>>> now 3 copies of each of these commits. This mess is already in the >>>>>>>> bioconductor repository because in order to allow me to get some last >>>>>>>> minute changes in for the last release, someone at boic disabled the >>>>>>>> duplicate commit check for me. That was before I understood the extend >>>>>>>> of the problem. >>>>>>>> >>>>>>>> I'm not sure if its really your job to help with this sort of thing, >>>>>>>> as I understand that it's not a bioconductor problem. So if not that >>>>>>>> is fine. I've spent 6 hours trying to fix it myself ( and I am >>>>>>>> generally good with GIT), but I've only succeeded in make more >>>>>>>> duplicates. So I think I'd need to toss all the history up to the last >>>>>>>> release, which I image I'd need your help to reset the repo on the >>>>>>>> bioc side as well. >>>>>>>> >>>>>>>> If you can help, there are more specifics I can give you, just let >>>>>>>> me know. >>>>>>>> >>>>>>>> Thanks. >>>>>>>> >>>>>>>> >>>>>>>> Kevin Horan >>>>>>>> >>>>>>> This email message may contain legally privileged and/or confidential >>>>>>> information. If you are not the intended recipient(s), or the employee >>>>>>> or agent responsible for the delivery of this message to the intended >>>>>>> recipient(s), you are hereby notified that any disclosure, copying, >>>>>>> distribution, or use of this email message is prohibited. If you have >>>>>>> received this message in error, please notify the sender immediately by >>>>>>> e-mail and delete this email message from your computer. Thank you. >>>>> >>>>> This email message may contain legally privileged and/or confidential >>>>> information. If you are not the intended recipient(s), or the employee >>>>> or agent responsible for the delivery of this message to the intended >>>>> recipient(s), you are hereby notified that any disclosure, copying, >>>>> distribution, or use of this email message is prohibited. If you have >>>>> received this message in error, please notify the sender immediately by >>>>> e-mail and delete this email message from your computer. Thank you. >>> >>> >>> This email message may contain legally privileged and/or confidential >>> information. If you are not the intended recipient(s), or the employee or >>> agent responsible for the delivery of this message to the intended >>> recipient(s), you are hereby notified that any disclosure, copying, >>> distribution, or use of this email message is prohibited. If you have >>> received this message in error, please notify the sender immediately by >>> e-mail and delete this email message from your computer. Thank you. >>> _______________________________________________ >>> Bioc-devel@r-project.org mailing list >>> https://stat.ethz.ch/mailman/listinfo/bioc-devel >> >> >> This email message may contain legally privileged and/or confidential >> information. If you are not the intended recipient(s), or the employee or >> agent responsible for the delivery of this message to the intended >> recipient(s), you are hereby notified that any disclosure, copying, >> distribution, or use of this email message is prohibited. If you have >> received this message in error, please notify the sender immediately by >> e-mail and delete this email message from your computer. Thank you. > This email message may contain legally privileged and/or confidential information. 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