Great news! Thanks Valerie
Best Regards Yuriy On Fri, Jan 19, 2018 at 11:40 AM, Obenchain, Valerie < valerie.obench...@roswellpark.org> wrote: > Hi Krithika, > > I believe this was related to a problem with getTable() in rtracklayer: > > https://github.com/lawremi/rtracklayer/issues/5 > > rtracklayer 1.39.5 built successfully today and the error in CINdex has > cleared up: > > https://bioconductor.org/packages/3.7/bioc/html/CINdex.html > > Valerie > > > > On 01/18/2018 08:19 AM, Krithika Bhuvaneshwar wrote: > > Hello Bioconductor team, > > We are the creator and maintainers of the CINdex Bioconductor package. > > Last few days, we are seeing build errors in our package (See below). The > package builds fine in Mac OS, but is giving the following error on Ubuntu > OS.http://bioconductor.org/checkResults/release/bioc-LATEST/CINdex/malbec1-buildsrc.html > > > We have not made any changes to our package, and did not have any errors > previously. > > Is there some action we need to take on our part ? Please advise. > > Thanks, > Krithika > > Attaching package: 'Biobase' > > The following object is masked from 'package:AnnotationHub': > > cache > > =========================================================================== > Welcome to oligo version 1.42.0 > =========================================================================== > Loading required package: DBI > Warning: closing unused connection 5 (hg19ToHg18.over.chain) > Loading ideogram... > Quitting from lines 230-240 (PrepareInputData.Rmd) > Error: processing vignette 'PrepareInputData.Rmd' failed with diagnostics: > Bad Request > Execution halted > > [[alternative HTML version deleted]] > > _______________________________________________bioc-de...@r-project.org > mailing listhttps://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > This email message may contain legally privileged and/or confidential > information. If you are not the intended recipient(s), or the employee or > agent responsible for the delivery of this message to the intended > recipient(s), you are hereby notified that any disclosure, copying, > distribution, or use of this email message is prohibited. If you have > received this message in error, please notify the sender immediately by > e-mail and delete this email message from your computer. Thank you. -- Yuriy Gusev, Ph.D., Associate Professor Innovation Center for Biomedical Informatics (ICBI) Georgetown University Medical Center 2115 Wisconsin Ave NW, Suite 110 Washington DC 20007 Tel. (202) 687-5094; Fax (202) 687-5011 Email: y...@georgetown.edu ORCID ID: orcid.org/0000-0001-7371-4715 Website:icbi.georgetown.edu/ edX MOOC: https://www.edx.org/course/demystifying-biomedical-big-data-users-georgetownx-biox-201-01x [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
