I used "R CMD check PathwaySplice_1.3.0.tar.gz", and get it passed without errors and warnings.
However I get the following error when I use "R CMD BiocCheck PathwaySplice_1.3.0.tar.gz" R CMD BiocCheck PathwaySplice_1.3.0.tar.gz This is BiocCheck version 1.15.8. BiocCheck is a work in progress. Output and severity of issues may change. Installing package... * Checking for version number mismatch... * Checking if other packages can import this one... * Checking to see if we understand object initialization... * NOTE: Consider clarifying how 12 object(s) are initialized. Maybe they are part of a data set loaded with data(), or perhaps part of an object referenced in with() or within(). object (function) winMenuAddItem (.onAttach) ggplot (compareResults2) aes (compareResults2) random_sampling_200k (compareResults2) PValue (compareResults2) PathwaySplice (compareResults2) geom_point (compareResults2) geom_smooth (compareResults2) labs (compareResults2) scale_colour_manual (compareResults2) scale_shape_manual (compareResults2) get.col.scale (netplot) * Checking vignette directory... This is a software package Error in vapply(vigdircontents, vigHelper, logical(1), builder = desc) : values must be length 1, but FUN(X[[1]]) result is length 2 Calls: <Anonymous> ... BiocCheck -> checkVignetteDir -> checkVigBuilder -> vapply Execution halted Any idea about this? Here is my sessionInfo() https://gist.github.com/aiminy/764718da9b9eeedd6f5eea196ce956b4 Thank you, Aimin [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel