Interesting. I'm glad you sorted it out and thanks for checking in a fix. If you run into problems with git there is some good documentation here:
http://www.bioconductor.org/developers/how-to/git/ Valerie On 04/20/2018 02:55 PM, Karl Stamm wrote: Fixed. You were right about R 3.5. They've started issuing a warning about deprecation of using * to multiply a one by one matrix onto a vector. I did that about a thousand times and then the vignette had a code-output table that was impossibly tall. Explicitly casting the 1x1 matrix into a vector lets the x*y be used without warnings. Looks like other people ran into this situation mid 2017. I am unfamiliar with the github system, so I pushed my code up to the git repo and am just hoping it gets picked up by the bioconductor systems tomorrow. On Fri, Apr 20, 2018 at 4:14 PM, Karl Stamm <karl.st...@gmail.com<mailto:karl.st...@gmail.com>> wrote: Aha, the error is reproduced in R 3.5.0. I can take a look at it now. On Fri, Apr 20, 2018 at 3:37 PM, Obenchain, Valerie <valerie.obench...@roswellpark.org<mailto:valerie.obench...@roswellpark.org>> wrote: I'm out for the next few days so will look into this more next week. I should mention this week we updated to the release candidate of R 3.5.0 on all release and devel build machines. Today rgsepd is broken on all 3 platforms which may point to a change in R itself. Are you using R 3.5.0 for testing? If not, it would be a good idea to update and see if you can reproduce the error. Valerie On 04/19/2018 03:38 PM, Obenchain, Valerie wrote: Hi Karl, I'll look into this. Valerie On 04/19/2018 02:00 PM, Karl Stamm wrote: How can I debug an error that occurs on the build server and not on my PC ? I am having build errors on two of the three build servers with a line about vignette compilation and the latex error does not have enough detail to find the source of the problem. I've recompiled the package on my machine and the vignette looks fine. There have been no updates recently, so I dont have any code changes to point at ! * installing the package to build vignettes * creating vignettes ... ERROR Error in texi2dvi(file = file, pdf = TRUE, clean = clean, quiet = quiet, : Running 'texi2dvi' on 'rgsepd.tex' failed. LaTeX errors: ! Dimension too large. \fb@put@frame ...p \ifdim \dimen@ >\ht \@tempboxa \fb@putboxa #1\fb@afterfra... l.3042 ...ssagecolor}{\#\# All Done!}}\end{kframe} [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org><mailto:Bioc-devel@r-project.org><mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
