Dear Sir,
Please inform me the current status of the package named "sigFeature".
The package link is given below.
https://github.com/Bioconductor/Contributions/issues/713
Thank you
regards
Pijush
On Fri, Apr 27, 2018 at 7:00 PM, Pijush Das <topij...@gmail.com
<mailto:topij...@gmail.com>> wrote:
Now it is opening. It may be some kind of problem is there with the
internet connection.
On Fri, Apr 27, 2018 at 6:56 PM, Shepherd, Lori
<lori.sheph...@roswellpark.org
<mailto:lori.sheph...@roswellpark.org>> wrote:
I am still able to open the link:
https://github.com/Bioconductor/Contributions/issues/713
<https://github.com/Bioconductor/Contributions/issues/713>
Perhaps there is some firewall or ani-virus program you are
running that is blocking access?
When you try to go to the link, what message is displayed?
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
------------------------------------------------------------------------
*From:* Bioc-devel <bioc-devel-boun...@r-project.org
<mailto:bioc-devel-boun...@r-project.org>> on behalf of
Shepherd, Lori <lori.sheph...@roswellpark.org>
*Sent:* Friday, April 27, 2018 8:18:23 AM
*To:* Pijush Das; Morgan, Martin
*Cc:* bioc-devel@r-project.org <mailto:bioc-devel@r-project.org>
*Subject:* Re: [Bioc-devel] Need some help to submit a R package.
I am able to open this link. Perhaps it was an intermittent
internet connection issue? Are you able to open the link now?
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
________________________________
From: Pijush Das <topij...@gmail.com <mailto:topij...@gmail.com>>
Sent: Friday, April 27, 2018 7:06:07 AM
To: Morgan, Martin
Cc: Shepherd, Lori; bioc-devel@r-project.org
<mailto:bioc-devel@r-project.org>
Subject: Re: [Bioc-devel] Need some help to submit a R package.
Dear Sir,
I have found some problem in github link given below:
https://github.com/Bioconductor/Contributions/issues/713
<https://github.com/Bioconductor/Contributions/issues/713>
The link is not opening. Is there any problem in github repository?
Please check it.
Thank you
regards
Pijush
On Thu, Apr 26, 2018 at 2:32 PM, Martin Morgan
<martin.mor...@roswellpark.org
<mailto:martin.mor...@roswellpark.org><mailto:martin.mor...@roswellpark.org
<mailto:martin.mor...@roswellpark.org>>> wrote:
Wait for the reviewer to comment further on your package.
On 04/26/2018 02:20 AM, Pijush Das wrote:
Dear Sir,
I have found that my package sigFeature had passed all the built
test without errors or warnings
on all platforms.
What should I do next ?
regards
Pijush
On Tue, Apr 24, 2018 at 10:56 PM, Shepherd, Lori
<lori.sheph...@roswellpark.org
<mailto:lori.sheph...@roswellpark.org><mailto:lori.sheph...@roswellpark.org
<mailto:lori.sheph...@roswellpark.org>>
<mailto:lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org
<mailto:lori.sheph...@roswellpark.org%3Cmailto:lori.sheph...@roswellpark.org>>>>
wrote:
It doesn't look like the webhook was ever initialized
Please follow the instructions here:
https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md#adding-a-web-hook
<https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md#adding-a-web-hook>
<https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md#adding-a-web-hook
<https://github.com/Bioconductor/Contributions/blob/master/CONTRIBUTING.md#adding-a-web-hook>>
After the webhook is set up you will need to do another
version bump
to trigger the build - Please post further correspondence
regarding
your package submission on the open github issue
https://github.com/Bioconductor/Contributions/issues/713
<https://github.com/Bioconductor/Contributions/issues/713>
<https://github.com/Bioconductor/Contributions/issues/713
<https://github.com/Bioconductor/Contributions/issues/713>>
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
------------------------------------------------------------------------
*From:* Pijush Das <topij...@gmail.com
<mailto:topij...@gmail.com><mailto:topij...@gmail.com
<mailto:topij...@gmail.com>>
<mailto:topij...@gmail.com<mailto:topij...@gmail.com
<mailto:topij...@gmail.com%3Cmailto:topij...@gmail.com>>>>
*Sent:* Tuesday, April 24, 2018 11:33:14 AM
*To:* Shepherd, Lori
*Cc:* Morgan, Martin; bioc-devel@r-project.org
<mailto:bioc-devel@r-project.org><mailto:bioc-devel@r-project.org
<mailto:bioc-devel@r-project.org>>
<mailto:bioc-devel@r-project.org<mailto:bioc-devel@r-project.org
<mailto:bioc-devel@r-project.org%3Cmailto:bioc-devel@r-project.org>>>
*Subject:* Re: [Bioc-devel] Need some help to submit a R
package.
Dear sir,
I have uploaded the sigFeature package ( Version: 0.99.1)
in the
existing git repository and did a version bump. The link is
given below.
https://github.com/pijush1285/sigFeature
<https://github.com/pijush1285/sigFeature>
<https://github.com/pijush1285/sigFeature
<https://github.com/pijush1285/sigFeature>>
But still now I am not getting any response.
Is there required to add the web hook again ?
Thank you
regards
Pijush
On Tue, Apr 24, 2018 at 5:34 PM, Shepherd, Lori
<lori.sheph...@roswellpark.org
<mailto:lori.sheph...@roswellpark.org><mailto:lori.sheph...@roswellpark.org
<mailto:lori.sheph...@roswellpark.org>>
<mailto:lori.sheph...@roswellpark.org<mailto:lori.sheph...@roswellpark.org
<mailto:lori.sheph...@roswellpark.org%3Cmailto:lori.sheph...@roswellpark.org>>>>
wrote:
We like to keep track of the changes and have the
reviews in one
place. If possible it would be better to replace the
contents
of existing git repository and do a version bump.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
------------------------------------------------------------------------
*From:* Bioc-devel <bioc-devel-boun...@r-project.org
<mailto:bioc-devel-boun...@r-project.org><mailto:bioc-devel-boun...@r-project.org
<mailto:bioc-devel-boun...@r-project.org>>
<mailto:bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org
<mailto:bioc-devel-boun...@r-project.org%3Cmailto:bioc-devel-boun...@r-project.org>>>>
on behalf of Pijush
Das <topij...@gmail.com
<mailto:topij...@gmail.com><mailto:topij...@gmail.com
<mailto:topij...@gmail.com>>
<mailto:topij...@gmail.com<mailto:topij...@gmail.com
<mailto:topij...@gmail.com%3Cmailto:topij...@gmail.com>>>>
*Sent:* Tuesday, April 24, 2018 7:43:04 AM
*To:* Morgan, Martin
*Cc:* bioc-devel@r-project.org
<mailto:bioc-devel@r-project.org><mailto:bioc-devel@r-project.org
<mailto:bioc-devel@r-project.org>>
<mailto:bioc-devel@r-project.org<mailto:bioc-devel@r-project.org
<mailto:bioc-devel@r-project.org%3Cmailto:bioc-devel@r-project.org>>>
*Subject:* Re: [Bioc-devel] Need some help to submit a
R package.
Dear Sir,
I have solved most of the issues raised by the reviewers.
There were significant amount of changes in the
original code.
So should we submit our package (sigFeature) as a new
submission
or replace the contents of existing git repository with
version
increment.
regards
Pijush
On Mon, Apr 16, 2018 at 5:01 PM, Martin Morgan <
martin.mor...@roswellpark.org
<mailto:martin.mor...@roswellpark.org><mailto:martin.mor...@roswellpark.org
<mailto:martin.mor...@roswellpark.org>>
<mailto:martin.mor...@roswellpark.org<mailto:martin.mor...@roswellpark.org
<mailto:martin.mor...@roswellpark.org%3Cmailto:martin.mor...@roswellpark.org>>>>
wrote:
> If you are still having problems understanding
warnings, it is probably
> better to use the github issue -- it may take some
time to get an answer,
> because the reviewers have many responsibilities.
>
> It looks like your 'webhook' is not correct, and that
you are not changing
> the version of your package (from 0.99.0 to 0.99.1,
0.99.2, ...) when you
> wish to generate another build report. @grimbough
indicated in the github
> issue how to address these problems.
>
> Martin
>
>
> On 04/16/2018 03:58 AM, Pijush Das wrote:
>
>> Dear Ruqian,
>>
>>
>> Yes sir, I have opened the build report which is a
link to an HTML page
>> with details.
>> But I unable to understand why the WARNING massages
are showing.
>>
>> Three days before the other reviewers had made some
comments and asked me
>> to address
>> those issues and also told me to solve the NOTEs
produced by BioCheck.
>>
>> Presently I am working on the sigFeature package to
address those issues.
>> I shall communicate soon after solving those issues.
>>
>>
>> Thank you
>>
>>
>> Regards
>> Pijush
>>
>>
>>
>> On Mon, Apr 16, 2018 at 4:06 AM, Ruqian Lyu <
>> ruqi...@student.unimelb.edu.au
<mailto:ruqi...@student.unimelb.edu.au><mailto:ruqi...@student.unimelb.edu.au
<mailto:ruqi...@student.unimelb.edu.au>>
<mailto:ruqi...@student.unimelb.edu.au<mailto:ruqi...@student.unimelb.edu.au
<mailto:ruqi...@student.unimelb.edu.au%3Cmailto:ruqi...@student.unimelb.edu.au>>>>
>> wrote:
>>
>> Hi Pijush,
>>>
>>> Did you open the build report which is a link to an
HTML page with
>>> details
>>> of the warning?
>>>
>>>
>>> Regards,
>>> Ruqian
>>>
>>>
>>>
>>> On Fri, Apr 13, 2018 at 4:54 PM, Pijush Das
<topij...@gmail.com
<mailto:topij...@gmail.com><mailto:topij...@gmail.com
<mailto:topij...@gmail.com>>
<mailto:topij...@gmail.com<mailto:topij...@gmail.com
<mailto:topij...@gmail.com%3Cmailto:topij...@gmail.com>>>> wrote:
>>>
>>> Dear Sir,
>>>>
>>>>
>>>> I have submitted an R package named "sigFeature"
in Github and also
>>>> Bioconductor 9 days before.
>>>> The reviewers only said that there is some WARNING
problem in the
>>>> package
>>>> in different platform.
>>>>
>>>> But after that they are not communicating any
thing regarding the
>>>> package.
>>>> I have checked the package
>>>> windows and Ubuntu it is working fine.
>>>>
>>>> I unable to understand what actually the problem is ?
>>>> And the reviewers are not communicating about the
problem. Though I am
>>>> getting lots of email from bioc-devel dealing with
others package
>>>> problem .
>>>>
>>>> Please suggest me what should I do now ?
>>>>
>>>>
>>>>
>>>>
>>>> Thank you
>>>>
>>>>
>>>>
>>>> Regards
>>>> Pijush
>>>>
>>>>
>>>>
>>>>
>>>> On Mon, Apr 2, 2018 at 4:26 PM, Turaga, Nitesh <
>>>> nitesh.tur...@roswellpark.org
<mailto:nitesh.tur...@roswellpark.org><mailto:nitesh.tur...@roswellpark.org
<mailto:nitesh.tur...@roswellpark.org>>
<mailto:nitesh.tur...@roswellpark.org<mailto:nitesh.tur...@roswellpark.org
<mailto:nitesh.tur...@roswellpark.org%3Cmailto:nitesh.tur...@roswellpark.org>>>>
wrote:
>>>>
>>>> Hi,
>>>>>
>>>>> Please read through this documentation.
>>>>>
>>>>>
http://bioconductor.org/developers/package-submission/
<http://bioconductor.org/developers/package-submission/>
<http://bioconductor.org/developers/package-submission/
<http://bioconductor.org/developers/package-submission/>>
>>>>>
>>>>>
>>>>> Nitesh
>>>>>
>>>>> On Apr 2, 2018, at 2:00 AM, Pijush Das
<topij...@gmail.com
<mailto:topij...@gmail.com><mailto:topij...@gmail.com
<mailto:topij...@gmail.com>>
<mailto:topij...@gmail.com<mailto:topij...@gmail.com
<mailto:topij...@gmail.com%3Cmailto:topij...@gmail.com>>>> wrote:
>>>>>>
>>>>>> Dear Sir,
>>>>>>
>>>>>>
>>>>>>
>>>>>> I have developed an R package. I want to submit
this package in
>>>>>> Bioconductor.
>>>>>> Please help me to submit the R package.
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> regards
>>>>>> Pijush Das
>>>>>>
>>>>>> [[alternative HTML version deleted]]
>>>>>>
>>>>>> _______________________________________________
>>>>>> Bioc-devel@r-project.org
<mailto:Bioc-devel@r-project.org><mailto:Bioc-devel@r-project.org
<mailto:Bioc-devel@r-project.org>>
<mailto:Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org
<mailto:Bioc-devel@r-project.org%3Cmailto:Bioc-devel@r-project.org>>>
mailing list
>>>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
<https://stat.ethz.ch/mailman/listinfo/bioc-devel>
<https://stat.ethz.ch/mailman/listinfo/bioc-devel
<https://stat.ethz.ch/mailman/listinfo/bioc-devel>>
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> This email message may contain legally privileged
and/or confidential
>>>>> information. If you are not the intended
recipient(s), or the employee
>>>>>
>>>> or
>>>>
>>>>> agent responsible for the delivery of this
message to the intended
>>>>> recipient(s), you are hereby notified that any
disclosure, copying,
>>>>> distribution, or use of this email message is
prohibited. If you have
>>>>> received this message in error, please notify the
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>>>>> e-mail and delete this email message from your
computer. Thank you.
>>>>>
>>>>>
>>>> [[alternative HTML version deleted]]
>>>>
>>>> _______________________________________________
>>>> Bioc-devel@r-project.org
<mailto:Bioc-devel@r-project.org><mailto:Bioc-devel@r-project.org
<mailto:Bioc-devel@r-project.org>>
<mailto:Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org
<mailto:Bioc-devel@r-project.org%3Cmailto:Bioc-devel@r-project.org>>>
mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
<https://stat.ethz.ch/mailman/listinfo/bioc-devel>
<https://stat.ethz.ch/mailman/listinfo/bioc-devel
<https://stat.ethz.ch/mailman/listinfo/bioc-devel>>
>>>>
>>>>
>>>
>>>
>> [[alternative HTML version deleted]]
>>
>> _______________________________________________
>> Bioc-devel@r-project.org
<mailto:Bioc-devel@r-project.org><mailto:Bioc-devel@r-project.org
<mailto:Bioc-devel@r-project.org>>
<mailto:Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org
<mailto:Bioc-devel@r-project.org%3Cmailto:Bioc-devel@r-project.org>>>
mailing list
>> https://stat.ethz.ch/mailman/listinfo/bioc-devel
<https://stat.ethz.ch/mailman/listinfo/bioc-devel>
<https://stat.ethz.ch/mailman/listinfo/bioc-devel
<https://stat.ethz.ch/mailman/listinfo/bioc-devel>>
>>
>>
>
> This email message may contain legally privileged
and/or confidential
> information. If you are not the intended
recipient(s), or the employee or
> agent responsible for the delivery of this message to
the intended
> recipient(s), you are hereby notified that any
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> distribution, or use of this email message is
prohibited. If you have
> received this message in error, please notify the
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> e-mail and delete this email message from your
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>
[[alternative HTML version deleted]]
_______________________________________________
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<mailto:Bioc-devel@r-project.org><mailto:Bioc-devel@r-project.org
<mailto:Bioc-devel@r-project.org>>
<mailto:Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org
<mailto:Bioc-devel@r-project.org%3Cmailto:Bioc-devel@r-project.org>>>
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This email message may contain legally privileged and/or
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