Thank you very much for the information, Lori! Best regards with many thanks!
Xiangyu On Wed, Sep 5, 2018 at 7:45 PM Shepherd, Lori <lori.sheph...@roswellpark.org> wrote: > Also remember if you are referring to the Citation that appears on the > landing pages - packages are built once a day and the landing page could > take up to 2 days to reflect the CITATION change after you push changes to > the git.bioconductor.org server with a valid version bump. > > > Lori Shepherd > > Bioconductor Core Team > > Roswell Park Cancer Institute > > Department of Biostatistics & Bioinformatics > > Elm & Carlton Streets > > Buffalo, New York 14263 > ------------------------------ > *From:* Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Martin > Morgan <mtmorgan.b...@gmail.com> > *Sent:* Wednesday, September 5, 2018 7:37:54 AM > *To:* Xiangyu Luo > *Cc:* bioc-devel@r-project.org > *Subject:* Re: [Bioc-devel] Change the citation of my Bioconductor R > package "BUScorrect" > > Please note, there is no CITATION file anywhere in your repository! > > Verify this for yourself, if you like, by changing to a temporary > location and making a new clone of your package > > git clone g...@git.bioconductor.org:pacakges/BUScorrect > > You have not added it to your local repository, or not committed the > change to your local repository, or not pushed the commit successfully > to the Bioconductor git repository. > > Why not try to add the CITATION file back to inst/, and show what you do > to add, commit, and push your changes. Remember that you must update the > repository at the remote git.bioconductor.org. > > Martin > > On 09/05/2018 06:26 AM, Xiangyu Luo wrote: > > Dear Martin, > > > > For version 0.9.9, I inserted a CITATION into the "inst", but it did not > > work. Therefore, in version 0.9.10, I took the CITATION file out of the > > "inst", but it still did not work. Thank you so much for your patience > > and guidance! > > > > Best regards, > > > > Xiangyu > > > > On Wed, Sep 5, 2018 at 6:20 PM Martin Morgan <mtmorgan.b...@gmail.com > > <mailto:mtmorgan.b...@gmail.com <mtmorgan.b...@gmail.com>>> wrote: > > > > after I > > > > git clone g...@git.bioconductor.org:packages/BUScorrect > > > > This is the log that I see > > > > BUScorrect master$ git log --name-only -n 2 > > commit 5ccfa7ce4f665f3ffbc55b26a5cd81beaafd3293 > > Author: Xiangyu Luo <xyluo1...@gmail.com <mailto:xyluo1...@gmail.com > <xyluo1...@gmail.com>>> > > Date: Fri Aug 31 19:10:32 2018 +0800 > > > > version bump > > > > DESCRIPTION > > > > commit 1a61e2971a7cc213704797b99c5447847332b39f > > Author: Xiangyu Luo <xyluo1...@gmail.com <mailto:xyluo1...@gmail.com > <xyluo1...@gmail.com>>> > > Date: Tue Aug 28 21:45:34 2018 +0800 > > > > version bump to 0.99.9 > > > > DESCRIPTION > > > > BUScorrect master$ ls inst/ > > NEWS.Rd unitTests > > > > > > Are you sure that you have added the citation file to your local git > > repository, and pushed the local repository to git.bioconductor.org > > <http://git.bioconductor.org>? > > > > On 09/05/2018 06:15 AM, Xiangyu Luo wrote: > > > Dear Martin, > > > > > > Thank you very much for the information! I have pushed my changes, > > > bumped the version, and waited for a successful nightly build, > > but the > > > citation result did not change. I am wondering whether the > CITATION > > > file should be in "inst" folder? > > > > > > Best, > > > > > > Xiangyu > > > > > > > > > > > > On Tue, Sep 4, 2018 at 9:05 PM Martin Morgan > > <mtmorgan.b...@gmail.com <mailto:mtmorgan.b...@gmail.com > <mtmorgan.b...@gmail.com>> > > > <mailto:mtmorgan.b...@gmail.com > > <mailto:mtmorgan.b...@gmail.com <mtmorgan.b...@gmail.com>>>> wrote: > > > > > > Have you pushed your changes to > > > g...@git.bioconductor.org:packages/BUScorrect and waited for a > > > successful > > > nightly build > > > > > > > http://bioconductor.org/checkResults/devel/bioc-LATEST/BUScorrect/ > > > > > > ? > > > > > > On 09/03/2018 07:10 AM, Xiangyu Luo wrote: > > > > Dear All, > > > > > > > > The citation information of my "BUScorrect" R package is > > shown as > > > an R > > > > package version (e.g., xxx, xxx, R package version > > 0.99.10.), but > > > I want it > > > > to be my original paper (e.g., xxx, xxx, JournalName). > > > > > > > > I tried to manually insert the "CITATION" file in the > "inst" > > > folder, as > > > > described in > > > > > > > > > > https://cran.r-project.org/doc/manuals/r-release/R-exts.html#CITATION-files > . > > > > It works if the package is installed locally. However, > > when the > > > package is > > > > installed from the Bioconductor platform, the citation is > > still the R > > > > package version. I am wondering how to change the > citation on > > > Bioconductor? > > > > > > > > Many thanks for your great help! > > > > > > > > Xiangyu > > > > > > > > [[alternative HTML version deleted]] > > > > > > > > _______________________________________________ > > > > Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org > <Bioc-devel@r-project.org>> > > <mailto:Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org > <Bioc-devel@r-project.org>>> > > > mailing list > > > > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > > > > > > > > > > _______________________________________________ > Bioc-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/bioc-devel > > This email message may contain legally privileged and/or confidential > information. 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