Hello, I followed every command. Everything is up to date.
MacBook-Pro:DMCHMM Farhad$ git remote add upstream g...@git.bioconductor.org:packages/DMCHMM.git fatal: remote upstream already exists. MacBook-Pro:DMCHMM Farhad$ git fetch --all Fetching origin Fetching upstream MacBook-Pro:DMCHMM Farhad$ git checkout master Switched to branch 'master' Your branch is up-to-date with 'origin/master'. MacBook-Pro:DMCHMM Farhad$ MacBook-Pro:DMCHMM Farhad$ git merge origin/master Already up-to-date. MacBook-Pro:DMCHMM Farhad$ git merge upstream/master Already up-to-date. MacBook-Pro:DMCHMM Farhad$ git push upstream master Everything up-to-date MacBook-Pro:DMCHMM Farhad$ git push origin master Everything up-to-date ——— Farhad Shokoohi, Ph.D. in Statistics shoko...@icloud.com > On Sep 5, 2018, at 9:33 AM, Shepherd, Lori <lori.sheph...@roswellpark.org> > wrote: > > If you didn't set up your remotes this link may be useful > > https://bioconductor.org/developers/how-to/git/sync-existing-repositories/ > <https://bioconductor.org/developers/how-to/git/sync-existing-repositories/> > > > > Lori Shepherd > Bioconductor Core Team > Roswell Park Cancer Institute > Department of Biostatistics & Bioinformatics > Elm & Carlton Streets > Buffalo, New York 14263 > From: Shepherd, Lori > Sent: Wednesday, September 5, 2018 9:32:08 AM > To: Obenchain, Valerie; Farhad Shokoohi > Subject: Re: [Bioc-devel] DMCHMM package new dev release > > You need to commit changes to git.bioconductor.org . There are no changes > pushed to our Bioconductor server. > > Please ensure you have followed the instructions for setting up your remotes > and pushed to the correct location > https://bioconductor.org/developers/how-to/git/push-to-github-bioc/ > <https://bioconductor.org/developers/how-to/git/push-to-github-bioc/> > > I would keep track of the commands you try and if you get any ERRORs please > post the commands with full output as a reply all. > > > Lori Shepherd > Bioconductor Core Team > Roswell Park Cancer Institute > Department of Biostatistics & Bioinformatics > Elm & Carlton Streets > Buffalo, New York 14263 > From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Farhad > Shokoohi via Bioc-devel <bioc-devel@r-project.org> > Sent: Wednesday, September 5, 2018 9:26:58 AM > To: Obenchain, Valerie > Cc: bioc-devel@r-project.org > Subject: Re: [Bioc-devel] DMCHMM package new dev release > > Hello, > > I did everything mentioned in the link. > I am also using Sourcetree app on Mac to commit changes but noting changes. > > Best, > ——— > Farhad Shokoohi, > Ph.D. in Statistics > shoko...@icloud.com > > > On Sep 4, 2018, at 11:59 AM, Obenchain, Valerie > > <valerie.obench...@roswellpark.org> wrote: > > > > The builds start ~5pm EST daily. Commits made before that time will be > > included in the nightly builds. The build report posts the following day > > (see time at top of page): > > > > https://www.bioconductor.org/checkResults/release/bioc-LATEST/ > > <https://www.bioconductor.org/checkResults/release/bioc-LATEST/> > > <https://www.bioconductor.org/checkResults/release/bioc-LATEST/ > > <https://www.bioconductor.org/checkResults/release/bioc-LATEST/>> > > https://www.bioconductor.org/checkResults/devel/bioc-LATEST/ > > <https://www.bioconductor.org/checkResults/devel/bioc-LATEST/> > > <https://www.bioconductor.org/checkResults/devel/bioc-LATEST/ > > <https://www.bioconductor.org/checkResults/devel/bioc-LATEST/>> > > > > If you don't see the package version you expected it's likely you missed > > the cutoff or didn't push to the git.bioconductor.org server. See git > > documentation here: > > > > https://www.bioconductor.org/developers/how-to/git/ > > <https://www.bioconductor.org/developers/how-to/git/> > > <https://www.bioconductor.org/developers/how-to/git/ > > <https://www.bioconductor.org/developers/how-to/git/>> > > > > Valerie > > > > > > On 09/04/2018 07:58 AM, Farhad Shokoohi via Bioc-devel wrote: > >> Hello, > >> > >> I have made some changes and updated my package DMCHMM and pushed it to > >> GitHub. > >> When the new update appears on bioconductor? > >> > >> Best, > >> > >> ——— > >> Farhad Shokoohi, > >> Ph.D. in Statistics > >> > >> [[alternative HTML version deleted]] > >> > >> _______________________________________________ > >> Bioc-devel@r-project.org <mailto:Bioc-devel@r-project.org > >> <mailto:Bioc-devel@r-project.org>> mailing list > >> https://stat.ethz.ch/mailman/listinfo/bioc-devel > >> <https://stat.ethz.ch/mailman/listinfo/bioc-devel> > >> <https://stat.ethz.ch/mailman/listinfo/bioc-devel > >> <https://stat.ethz.ch/mailman/listinfo/bioc-devel>> > >> > > > > > > This email message may contain legally privileged and/or confidential > > information. 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